Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GTH07_RS00635 Genome accession   NZ_CP047305
Coordinates   129593..130786 (+) Length   397 a.a.
NCBI ID   WP_000136722.1    Uniprot ID   -
Organism   Vibrio cholerae O37 strain ATCC 25872     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124593..135786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTH07_RS00600 (GTH07_00600) - 125430..125900 (-) 471 WP_000224703.1 Dps family protein -
  GTH07_RS00605 (GTH07_00605) - 126070..126399 (-) 330 WP_001117042.1 DUF2500 domain-containing protein -
  GTH07_RS00610 (GTH07_00610) - 126604..126972 (+) 369 WP_001289435.1 DUF4145 domain-containing protein -
  GTH07_RS00615 (GTH07_00615) - 127475..127732 (+) 258 WP_000479993.1 hypothetical protein -
  GTH07_RS00620 (GTH07_00620) - 127849..128478 (+) 630 WP_000062274.1 lysoplasmalogenase -
  GTH07_RS00625 (GTH07_00625) - 128527..128793 (-) 267 WP_000645840.1 DUF1145 domain-containing protein -
  GTH07_RS00630 (GTH07_00630) rsmD 128790..129389 (-) 600 WP_001189766.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GTH07_RS00635 (GTH07_00635) pilA 129593..130786 (+) 1194 WP_000136722.1 signal recognition particle-docking protein FtsY Machinery gene
  GTH07_RS00640 (GTH07_00640) ftsE 130835..131509 (+) 675 WP_000617864.1 cell division ATP-binding protein FtsE -
  GTH07_RS00645 (GTH07_00645) ftsX 131499..132491 (+) 993 WP_000279340.1 permease-like cell division protein FtsX -
  GTH07_RS00650 (GTH07_00650) rpoH 132661..133521 (+) 861 WP_000184359.1 RNA polymerase sigma factor RpoH -
  GTH07_RS00655 (GTH07_00655) sthA 133723..135123 (-) 1401 WP_000529898.1 Si-specific NAD(P)(+) transhydrogenase -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43495.14 Da        Isoelectric Point: 4.4045

>NTDB_id=359017 GTH07_RS00635 WP_000136722.1 129593..130786(+) (pilA) [Vibrio cholerae O37 strain ATCC 25872]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETETETATVE
PARIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQL
RDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQL
QVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLD
AGTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=359017 GTH07_RS00635 WP_000136722.1 129593..130786(+) (pilA) [Vibrio cholerae O37 strain ATCC 25872]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAA
CCTGCACGTATTGTTGAACAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGC
GAATATTGGCGCTGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAAC
TGCTGATTGCCGATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTG
CGTGATGGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGAT
CGACACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGG
CTAAACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTG
CAAGTGTGGGGAGAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGC
GATTGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGA
TGGAAGAGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGAT
GCGGGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAA
GCTTGATGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCG
GCGAGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(113-174)

SRP54-type protein, GTPase domain (SRP54)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50

85.642

0.428