Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   E8M06_RS08290 Genome accession   NZ_CP039462
Coordinates   1685163..1686938 (-) Length   591 a.a.
NCBI ID   WP_024411176.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680163..1691938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS08260 (E8M06_08270) - 1680236..1680658 (+) 423 WP_024387144.1 membrane protein -
  E8M06_RS08265 (E8M06_08275) - 1680648..1682447 (+) 1800 WP_136581496.1 acyltransferase family protein -
  E8M06_RS08270 (E8M06_08280) - 1682671..1683324 (-) 654 WP_024382396.1 phosphatase PAP2 family protein -
  E8M06_RS08275 (E8M06_08285) - 1683349..1683906 (-) 558 WP_024388277.1 ECF transporter S component -
  E8M06_RS08280 (E8M06_08290) - 1684230..1684775 (-) 546 WP_024411177.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  E8M06_RS08290 (E8M06_08300) oppA 1685163..1686938 (-) 1776 WP_024411176.1 oligopeptide ABC transporter substrate-binding protein Regulator
  E8M06_RS08295 (E8M06_08305) yidD 1687364..1687603 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  E8M06_RS08300 (E8M06_08310) - 1687603..1688334 (-) 732 WP_012027615.1 pseudouridine synthase -
  E8M06_RS08305 (E8M06_08315) scpB 1688324..1688893 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  E8M06_RS08310 (E8M06_08320) - 1688877..1689596 (-) 720 WP_002942755.1 segregation/condensation protein A -
  E8M06_RS08315 (E8M06_08325) xerD 1689596..1690327 (-) 732 WP_136581497.1 site-specific tyrosine recombinase XerD -
  E8M06_RS08320 (E8M06_08330) cbpB 1690324..1690782 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  E8M06_RS08325 (E8M06_08335) - 1690779..1691306 (-) 528 WP_136581498.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65498.22 Da        Isoelectric Point: 4.2751

>NTDB_id=358860 E8M06_RS08290 WP_024411176.1 1685163..1686938(-) (oppA) [Streptococcus suis strain WUSS351]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGEAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLESYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EVGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=358860 E8M06_RS08290 WP_024411176.1 1685163..1686938(-) (oppA) [Streptococcus suis strain WUSS351]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCATGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGAAAGGACTATAAATGGTCTGATGGGGAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGTGAGTCGGTGACCTATGTACCAAATGAGTACTATTTTAAAGGGAAAGTTAAGCTAGAGAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGATTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAATTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGTAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAATCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTATGACGTTTATATCGGTTCGGACAGTAAATCAGGGCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
CATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.657

100

0.66

Multiple sequence alignment