Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E8M06_RS07205 Genome accession   NZ_CP039462
Coordinates   1464056..1465858 (-) Length   600 a.a.
NCBI ID   WP_136581416.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459056..1470858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS07180 (E8M06_07190) - 1460346..1460831 (-) 486 WP_044677492.1 LURP-one-related family protein -
  E8M06_RS07185 (E8M06_07195) prsA 1461195..1462196 (-) 1002 WP_024408714.1 peptidylprolyl isomerase PrsA -
  E8M06_RS07190 (E8M06_07200) - 1462258..1462977 (-) 720 WP_044686580.1 O-methyltransferase -
  E8M06_RS07195 (E8M06_07205) - 1463052..1463600 (-) 549 WP_024385841.1 DUF6630 family protein -
  E8M06_RS07200 (E8M06_07210) - 1463611..1464054 (-) 444 WP_014637769.1 hypothetical protein -
  E8M06_RS07205 (E8M06_07215) pepF 1464056..1465858 (-) 1803 WP_136581416.1 oligoendopeptidase F Regulator
  E8M06_RS07210 (E8M06_07220) coiA 1466087..1467028 (-) 942 WP_136581417.1 competence protein CoiA family protein Machinery gene
  E8M06_RS07215 (E8M06_07225) - 1467090..1467656 (+) 567 WP_136581418.1 GNAT family protein -
  E8M06_RS07220 (E8M06_07230) metG 1467685..1469688 (-) 2004 WP_136581419.1 methionine--tRNA ligase -
  E8M06_RS07225 (E8M06_07235) - 1469801..1470841 (-) 1041 WP_044680857.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69188.37 Da        Isoelectric Point: 4.5572

>NTDB_id=358849 E8M06_RS07205 WP_136581416.1 1464056..1465858(-) (pepF) [Streptococcus suis strain WUSS351]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=358849 E8M06_RS07205 WP_136581416.1 1464056..1465858(-) (pepF) [Streptococcus suis strain WUSS351]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACCATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTATCACAAGAGGTAGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTACCACTTTCACACGGGAACTACATCCACTTTATGGAGTCTAAAAACCGTGAAGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTATGATATGTACACGCCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGATTCCGTGGTACTGTTT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCAATCTACAAGGCAGATCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAATGAGAAGTACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTATAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697

Multiple sequence alignment