Detailed information NTG0358848

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: GTF71_RS13055
• Genome accession: NZ_CP047299
• Coordinates: 2880536..2882371 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae O1 biovar El Tor strain P27459
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2875536..2887371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF71_RS13035 (GTF71_13040)	fhuA	2875612..2877711 (-)	2100	WP_001244551.1	TonB-dependent siderophore receptor FhuA	-
GTF71_RS13040 (GTF71_13045)	-	2877846..2879675 (+)	1830	WP_000488008.1	ABC transporter ATP-binding protein	-
GTF71_RS13045 (GTF71_13050)	-	2879711..2880073 (-)	363	WP_001235441.1	hypothetical protein	-
GTF71_RS13050 (GTF71_13055)	-	2880244..2880543 (-)	300	WP_000807263.1	DUF3630 family protein	-
GTF71_RS13055 (GTF71_13060)	recQ	2880536..2882371 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
GTF71_RS13060 (GTF71_13065)	rarD	2882598..2883440 (+)	843	WP_001889839.1	EamA family transporter RarD	-
GTF71_RS13065 (GTF71_13070)	ggt	2883614..2885368 (+)	1755	WP_001104638.1	gamma-glutamyltransferase	-
GTF71_RS13070 (GTF71_13075)	-	2885525..2886328 (+)	804	WP_000381934.1	AraC family transcriptional regulator	-
GTF71_RS13075 (GTF71_13080)	-	2886403..2887071 (+)	669	WP_001004599.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=358848 GTF71_RS13055 WP_001918120.1 2880536..2882371(-) (recQ) [Vibrio cholerae O1 biovar El Tor strain P27459]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=358848 GTF71_RS13055 WP_001918120.1 2880536..2882371(-) (recQ) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATTCGTTATCTGGAAACTCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCAGGGATGGATGCCGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGTCGCGCAGGGCGTGATGGTTTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTATTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGTTGCGCGGCATGCAAAACATCCGCATTCGCGAACATG
GTCACGACAAAATTACCACTTATGGGATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCTCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAACTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394