Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   E8M06_RS01290 Genome accession   NZ_CP039462
Coordinates   248924..249637 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain WUSS351     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 243924..254637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS01280 (E8M06_01280) treC 244990..246615 (-) 1626 WP_136581038.1 alpha,alpha-phosphotrehalase -
  E8M06_RS01285 (E8M06_01285) treP 246696..248690 (-) 1995 Protein_224 PTS system trehalose-specific EIIBC component -
  E8M06_RS01290 (E8M06_01290) treR 248924..249637 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  E8M06_RS01295 (E8M06_01295) - 249695..250006 (+) 312 WP_002935948.1 hypothetical protein -
  E8M06_RS01300 (E8M06_01300) - 250003..250551 (+) 549 WP_136581039.1 CvpA family protein -
  E8M06_RS01305 (E8M06_01305) - 250713..253046 (+) 2334 WP_029188221.1 endonuclease MutS2 -
  E8M06_RS01310 (E8M06_01310) - 253212..253598 (+) 387 WP_029171667.1 DUF1310 family protein -
  E8M06_RS01315 (E8M06_01315) - 253595..253945 (+) 351 WP_228380693.1 hypothetical protein -
  E8M06_RS01320 (E8M06_01320) - 253993..254370 (+) 378 WP_105140500.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=358835 E8M06_RS01290 WP_012774930.1 248924..249637(+) (treR) [Streptococcus suis strain WUSS351]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=358835 E8M06_RS01290 WP_012774930.1 248924..249637(+) (treR) [Streptococcus suis strain WUSS351]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment