Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | GTF71_RS07225 | Genome accession | NZ_CP047299 |
| Coordinates | 1592917..1593297 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae O1 biovar El Tor strain P27459 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1587917..1598297
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF71_RS07200 (GTF71_07205) | - | 1588510..1589166 (+) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
| GTF71_RS07205 (GTF71_07210) | - | 1589177..1590043 (+) | 867 | WP_001002908.1 | CheR family methyltransferase | - |
| GTF71_RS07210 (GTF71_07215) | - | 1590021..1590392 (+) | 372 | WP_000757478.1 | response regulator | - |
| GTF71_RS07215 (GTF71_07220) | - | 1590401..1592674 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| GTF71_RS07220 (GTF71_07225) | - | 1592664..1592924 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| GTF71_RS07225 (GTF71_07230) | pilL-C | 1592917..1593297 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| GTF71_RS07230 (GTF71_07235) | - | 1593305..1594540 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| GTF71_RS07235 (GTF71_07240) | - | 1594595..1594909 (-) | 315 | WP_000312387.1 | DMT family transporter | - |
| GTF71_RS07240 (GTF71_07245) | - | 1595055..1596569 (-) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| GTF71_RS07245 (GTF71_07250) | - | 1596725..1598131 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=358808 GTF71_RS07225 WP_000045526.1 1592917..1593297(+) (pilL-C) [Vibrio cholerae O1 biovar El Tor strain P27459]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=358808 GTF71_RS07225 WP_000045526.1 1592917..1593297(+) (pilL-C) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |