Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E8M05_RS06600 Genome accession   NZ_CP039457
Coordinates   1245895..1247667 (-) Length   590 a.a.
NCBI ID   WP_058692202.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1241889..1265449 1245895..1247667 within 0


Gene organization within MGE regions


Location: 1241889..1265449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS06575 (E8M05_06565) - 1241889..1242647 (-) 759 WP_172473475.1 ABC transporter ATP-binding protein -
  E8M05_RS06580 (E8M05_06570) - 1242675..1243595 (-) 921 WP_013851962.1 glycine betaine ABC transporter substrate-binding protein -
  E8M05_RS06585 (E8M05_06575) - 1243585..1244220 (-) 636 WP_013851963.1 ABC transporter permease -
  E8M05_RS06590 (E8M05_06580) - 1244210..1244662 (-) 453 WP_003065246.1 MarR family winged helix-turn-helix transcriptional regulator -
  E8M05_RS06595 (E8M05_06585) - 1244652..1245629 (-) 978 WP_117479603.1 alcohol dehydrogenase catalytic domain-containing protein -
  E8M05_RS06600 (E8M05_06590) rcrQ 1245895..1247667 (-) 1773 WP_058692202.1 ABC transporter ATP-binding protein Regulator
  E8M05_RS06605 (E8M05_06595) rcrP 1247657..1249471 (-) 1815 WP_003065252.1 ABC transporter ATP-binding protein Regulator
  E8M05_RS06610 (E8M05_06600) rcrR 1249475..1249915 (-) 441 WP_061100410.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  E8M05_RS06615 (E8M05_06605) - 1250088..1250498 (-) 411 WP_136596451.1 peptide deformylase -
  E8M05_RS06620 (E8M05_06610) - 1250495..1251004 (-) 510 WP_117479609.1 GNAT family N-acetyltransferase -
  E8M05_RS06625 (E8M05_06615) gdhA 1251281..1252630 (-) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -
  E8M05_RS06630 (E8M05_06620) - 1252876..1253373 (+) 498 WP_003065265.1 DUF308 domain-containing protein -
  E8M05_RS11295 queF 1253429..1253920 (-) 492 WP_003065267.1 preQ(1) synthase -
  E8M05_RS11300 queE 1253933..1254646 (-) 714 WP_003065269.1 7-carboxy-7-deazaguanine synthase QueE -
  E8M05_RS06640 (E8M05_06630) queD 1254639..1255085 (-) 447 WP_003065271.1 6-carboxytetrahydropterin synthase QueD -
  E8M05_RS06645 (E8M05_06635) queC 1255085..1255738 (-) 654 WP_013851967.1 7-cyano-7-deazaguanine synthase QueC -
  E8M05_RS06650 (E8M05_06640) - 1255989..1257758 (-) 1770 WP_003065275.1 ABC transporter ATP-binding protein -
  E8M05_RS06655 (E8M05_06645) - 1257761..1259500 (-) 1740 WP_136596452.1 ABC transporter ATP-binding protein -
  E8M05_RS06660 (E8M05_06650) - 1259579..1261450 (-) 1872 WP_003065278.1 ABC-F family ATP-binding cassette domain-containing protein -
  E8M05_RS06665 (E8M05_06655) - 1261447..1262652 (-) 1206 WP_003065280.1 CCA tRNA nucleotidyltransferase -
  E8M05_RS06670 (E8M05_06660) dapB 1262649..1263416 (-) 768 WP_003065282.1 4-hydroxy-tetrahydrodipicolinate reductase -
  E8M05_RS06675 (E8M05_06665) - 1263436..1264284 (-) 849 WP_003065283.1 DegV family protein -
  E8M05_RS06680 (E8M05_06670) - 1264284..1264664 (-) 381 WP_003065285.1 DUF1149 family protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65338.42 Da        Isoelectric Point: 5.1262

>NTDB_id=358795 E8M05_RS06600 WP_058692202.1 1245895..1247667(-) (rcrQ) [Streptococcus pasteurianus strain WUSP067]
MENKKKTSFYDRMKPYIRGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=358795 E8M05_RS06600 WP_058692202.1 1245895..1247667(-) (rcrQ) [Streptococcus pasteurianus strain WUSP067]
ATGGAAAATAAGAAAAAAACATCTTTCTATGACAGAATGAAGCCCTATATTAGAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGATCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTCTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGTCAACAAAATAACTTGGCTGCGATTAATGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGGGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGCCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGATGAGTCTGATAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TGGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGCGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGACGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACACTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGACGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGCGGCTTCTATGCTGACCTCTACAATTCACAATT
TGAAGTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.311

100

0.736

Multiple sequence alignment