Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GTF71_RS00635 | Genome accession | NZ_CP047299 |
| Coordinates | 129544..130719 (+) | Length | 391 a.a. |
| NCBI ID | WP_000136719.1 | Uniprot ID | Q9KVJ6 |
| Organism | Vibrio cholerae O1 biovar El Tor strain P27459 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 124544..135719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF71_RS00600 (GTF71_00600) | - | 125381..125851 (-) | 471 | WP_000224703.1 | Dps family protein | - |
| GTF71_RS00605 (GTF71_00605) | - | 126021..126350 (-) | 330 | WP_001117042.1 | DUF2500 domain-containing protein | - |
| GTF71_RS00610 (GTF71_00610) | - | 126555..126923 (+) | 369 | WP_001289435.1 | DUF4145 domain-containing protein | - |
| GTF71_RS00615 (GTF71_00615) | - | 127426..127683 (+) | 258 | WP_000479993.1 | hypothetical protein | - |
| GTF71_RS00620 (GTF71_00620) | - | 127800..128429 (+) | 630 | WP_000062274.1 | lysoplasmalogenase | - |
| GTF71_RS00625 (GTF71_00625) | - | 128478..128744 (-) | 267 | WP_000645840.1 | DUF1145 domain-containing protein | - |
| GTF71_RS00630 (GTF71_00630) | rsmD | 128741..129340 (-) | 600 | WP_001189766.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GTF71_RS00635 (GTF71_00635) | pilA | 129544..130719 (+) | 1176 | WP_000136719.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GTF71_RS00640 (GTF71_00640) | ftsE | 130768..131442 (+) | 675 | WP_000617864.1 | cell division ATP-binding protein FtsE | - |
| GTF71_RS00645 (GTF71_00645) | ftsX | 131432..132424 (+) | 993 | WP_000279340.1 | permease-like cell division protein FtsX | - |
| GTF71_RS00650 (GTF71_00650) | rpoH | 132594..133454 (+) | 861 | WP_000184359.1 | RNA polymerase sigma factor RpoH | - |
| GTF71_RS00655 (GTF71_00655) | sthA | 133656..135056 (-) | 1401 | WP_000529898.1 | Si-specific NAD(P)(+) transhydrogenase | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 42804.47 Da Isoelectric Point: 4.4722
>NTDB_id=358772 GTF71_RS00635 WP_000136719.1 129544..130719(+) (pilA) [Vibrio cholerae O1 biovar El Tor strain P27459]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETATVEPARIVE
QEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGER
NQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQN
AISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETATVEPARIVE
QEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGER
NQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQN
AISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
Nucleotide
Download Length: 1176 bp
>NTDB_id=358772 GTF71_RS00635 WP_000136719.1 129544..130719(+) (pilA) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAA
CAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTT
CTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCG
GCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTG
TACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACC
TTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGC
AAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGC
AATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGC
GCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGA
TTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAAC
GCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAA
AGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACT
TACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAA
CAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTT
CTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCG
GCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTG
TACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACC
TTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGC
AAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGC
AATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGC
GCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGA
TTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAAC
GCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAA
AGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACT
TACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54 |
76.726 |
0.414 |