Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | E9099_RS08310 | Genome accession | NZ_CP039451 |
| Coordinates | 1903299..1904660 (+) | Length | 453 a.a. |
| NCBI ID | WP_136583193.1 | Uniprot ID | A0A4P7WVG7 |
| Organism | Psychroserpens sp. NJDZ02 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1898299..1909660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E9099_RS08285 (E9099_08295) | - | 1899022..1899831 (-) | 810 | WP_136583188.1 | glycogen/starch synthase | - |
| E9099_RS08290 (E9099_08300) | panC | 1899941..1900789 (+) | 849 | WP_136583189.1 | pantoate--beta-alanine ligase | - |
| E9099_RS08295 (E9099_08305) | panD | 1900804..1901154 (+) | 351 | WP_136583190.1 | aspartate 1-decarboxylase | - |
| E9099_RS08300 (E9099_08310) | - | 1901155..1902111 (+) | 957 | WP_136583191.1 | YbhN family protein | - |
| E9099_RS08305 (E9099_08315) | - | 1902150..1903295 (+) | 1146 | WP_136583192.1 | alpha/beta hydrolase | - |
| E9099_RS08310 (E9099_08320) | radA | 1903299..1904660 (+) | 1362 | WP_136583193.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 49997.43 Da Isoelectric Point: 6.5082
>NTDB_id=358696 E9099_RS08310 WP_136583193.1 1903299..1904660(+) (radA) [Psychroserpens sp. NJDZ02]
MAKVKTTFFCQNCGTQYAKWQGQCNACKEWNTIVEEVVQKPEKSEWKTPSNSSKRVSKPLRIKEIDSSKEARLDTLDGEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPNNDSCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQVKECTTELIKFAKETNTPVILIGHITKDGNIAGPKILEHMVDTVLHFEGD
RNHVFRILRAQKNRFGSTHELGIYEMQGSGLREVSNPSEILISKKDEELSGNAIAATLEGVRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEALLANYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLKDTAIKIQLISKIEDLVDLIIN
MAKVKTTFFCQNCGTQYAKWQGQCNACKEWNTIVEEVVQKPEKSEWKTPSNSSKRVSKPLRIKEIDSSKEARLDTLDGEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPNNDSCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQVKECTTELIKFAKETNTPVILIGHITKDGNIAGPKILEHMVDTVLHFEGD
RNHVFRILRAQKNRFGSTHELGIYEMQGSGLREVSNPSEILISKKDEELSGNAIAATLEGVRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEALLANYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLKDTAIKIQLISKIEDLVDLIIN
Nucleotide
Download Length: 1362 bp
>NTDB_id=358696 E9099_RS08310 WP_136583193.1 1903299..1904660(+) (radA) [Psychroserpens sp. NJDZ02]
ATGGCAAAAGTAAAAACAACTTTTTTTTGTCAAAATTGCGGGACGCAATATGCAAAATGGCAAGGTCAGTGTAATGCTTG
TAAAGAGTGGAATACTATTGTTGAAGAGGTTGTGCAAAAGCCTGAAAAAAGCGAATGGAAAACACCTAGTAATAGTTCTA
AAAGGGTGTCTAAACCTTTACGGATTAAAGAGATTGATTCTTCTAAAGAGGCTAGGTTAGATACTTTAGATGGAGAGTTT
AATCGTGTTTTAGGGGGTGGGATTGTGCCTGGATCTTTGACGTTGTTAGGAGGAGAGCCTGGAATAGGTAAAAGTACTTT
GCTGCTTCAGATTTCGTTAAAGTTACCTTATAAGACGTTGTATGTGTCTGGTGAAGAAAGTCAGAAGCAGATAAAAATGC
GTGCAGAACGTATCAATCCAAATAACGATAGTTGTTATATTCTTACAGAAACAAAAACGCAAAATATTTTTAAACAAATT
GAAGCGTTAGAGCCTGATATTGTTATTATTGATTCCATTCAAACATTACATTCGGACTATATAGAATCGTCAAGCGGAAG
TATTAGCCAGGTTAAAGAGTGTACTACAGAGTTAATTAAATTTGCTAAGGAAACCAATACTCCAGTGATTTTAATTGGAC
ATATTACCAAAGATGGAAACATTGCTGGGCCTAAAATATTGGAACATATGGTAGATACGGTGCTTCATTTTGAAGGTGAT
AGGAATCATGTTTTTAGAATTTTGCGTGCACAGAAAAATCGTTTTGGGTCTACACATGAATTAGGTATTTATGAAATGCA
AGGTTCTGGATTAAGAGAAGTCTCTAATCCAAGTGAGATTTTAATCTCTAAAAAAGACGAAGAATTATCTGGTAATGCTA
TTGCTGCTACTTTGGAAGGGGTAAGACCTTTGATGATAGAGGTGCAAGCTTTAGTTAGTACTGCTGTTTATGGAACACCA
CAACGTAGTGCAACTGGTTTTAATGCAAAACGTTTAAACATGTTGTTGGCTGTTCTAGAAAAACGTGCCGGTTTTAGATT
GGGAGCAAAAGATGTGTTTTTAAATATAACAGGAGGCATTAATGTAGATGATCCCGCAATAGATTTGGCTGTGGTTGCTG
CTATATTATCTTCAAATGAAGACGAAGCGTTGCTTGCTAATTATTGTTTTGCTGCAGAGGTTGGTTTGTCCGGCGAAATC
CGTCCAGTACAGCGTGTGGAGCAACGTATTCTTGAGGCTGAAAAATTAGGTTTTTCTACTATATTTGTATCTAAATACAA
TAAGATATCTTTGAAGGATACAGCAATCAAAATTCAATTGATCTCAAAAATTGAAGATTTGGTAGATTTGATTATTAATT
AA
ATGGCAAAAGTAAAAACAACTTTTTTTTGTCAAAATTGCGGGACGCAATATGCAAAATGGCAAGGTCAGTGTAATGCTTG
TAAAGAGTGGAATACTATTGTTGAAGAGGTTGTGCAAAAGCCTGAAAAAAGCGAATGGAAAACACCTAGTAATAGTTCTA
AAAGGGTGTCTAAACCTTTACGGATTAAAGAGATTGATTCTTCTAAAGAGGCTAGGTTAGATACTTTAGATGGAGAGTTT
AATCGTGTTTTAGGGGGTGGGATTGTGCCTGGATCTTTGACGTTGTTAGGAGGAGAGCCTGGAATAGGTAAAAGTACTTT
GCTGCTTCAGATTTCGTTAAAGTTACCTTATAAGACGTTGTATGTGTCTGGTGAAGAAAGTCAGAAGCAGATAAAAATGC
GTGCAGAACGTATCAATCCAAATAACGATAGTTGTTATATTCTTACAGAAACAAAAACGCAAAATATTTTTAAACAAATT
GAAGCGTTAGAGCCTGATATTGTTATTATTGATTCCATTCAAACATTACATTCGGACTATATAGAATCGTCAAGCGGAAG
TATTAGCCAGGTTAAAGAGTGTACTACAGAGTTAATTAAATTTGCTAAGGAAACCAATACTCCAGTGATTTTAATTGGAC
ATATTACCAAAGATGGAAACATTGCTGGGCCTAAAATATTGGAACATATGGTAGATACGGTGCTTCATTTTGAAGGTGAT
AGGAATCATGTTTTTAGAATTTTGCGTGCACAGAAAAATCGTTTTGGGTCTACACATGAATTAGGTATTTATGAAATGCA
AGGTTCTGGATTAAGAGAAGTCTCTAATCCAAGTGAGATTTTAATCTCTAAAAAAGACGAAGAATTATCTGGTAATGCTA
TTGCTGCTACTTTGGAAGGGGTAAGACCTTTGATGATAGAGGTGCAAGCTTTAGTTAGTACTGCTGTTTATGGAACACCA
CAACGTAGTGCAACTGGTTTTAATGCAAAACGTTTAAACATGTTGTTGGCTGTTCTAGAAAAACGTGCCGGTTTTAGATT
GGGAGCAAAAGATGTGTTTTTAAATATAACAGGAGGCATTAATGTAGATGATCCCGCAATAGATTTGGCTGTGGTTGCTG
CTATATTATCTTCAAATGAAGACGAAGCGTTGCTTGCTAATTATTGTTTTGCTGCAGAGGTTGGTTTGTCCGGCGAAATC
CGTCCAGTACAGCGTGTGGAGCAACGTATTCTTGAGGCTGAAAAATTAGGTTTTTCTACTATATTTGTATCTAAATACAA
TAAGATATCTTTGAAGGATACAGCAATCAAAATTCAATTGATCTCAAAAATTGAAGATTTGGTAGATTTGATTATTAATT
AA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.395 |
94.923 |
0.488 |
| radA | Streptococcus mitis SK321 |
49.661 |
97.792 |
0.486 |
| radA | Streptococcus pneumoniae Rx1 |
50.585 |
94.26 |
0.477 |
| radA | Streptococcus pneumoniae D39 |
50.585 |
94.26 |
0.477 |
| radA | Streptococcus pneumoniae R6 |
50.585 |
94.26 |
0.477 |
| radA | Streptococcus pneumoniae TIGR4 |
50.585 |
94.26 |
0.477 |
| radA | Streptococcus mitis NCTC 12261 |
50.585 |
94.26 |
0.477 |