Detailed information NTG0358680

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: GTF72_RS13355
• Genome accession: NZ_CP047295
• Coordinates: 2931397..2933232 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae C6706
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2926397..2938232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF72_RS13335 (GTF72_13345)	fhuA	2926473..2928572 (-)	2100	WP_001244551.1	TonB-dependent siderophore receptor FhuA	-
GTF72_RS13340 (GTF72_13350)	-	2928707..2930536 (+)	1830	WP_000488008.1	ABC transporter ATP-binding protein	-
GTF72_RS13345 (GTF72_13355)	-	2930572..2930934 (-)	363	WP_001235441.1	hypothetical protein	-
GTF72_RS13350 (GTF72_13360)	-	2931105..2931404 (-)	300	WP_000807263.1	DUF3630 family protein	-
GTF72_RS13355 (GTF72_13365)	recQ	2931397..2933232 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
GTF72_RS13360 (GTF72_13370)	rarD	2933459..2934301 (+)	843	WP_001889839.1	EamA family transporter RarD	-
GTF72_RS13365 (GTF72_13375)	ggt	2934475..2936229 (+)	1755	WP_001104638.1	gamma-glutamyltransferase	-
GTF72_RS13370 (GTF72_13380)	-	2936386..2937189 (+)	804	WP_000381934.1	AraC family transcriptional regulator	-
GTF72_RS13375 (GTF72_13385)	-	2937264..2937932 (+)	669	WP_001004599.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=358680 GTF72_RS13355 WP_001918120.1 2931397..2933232(-) (recQ) [Vibrio cholerae C6706]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=358680 GTF72_RS13355 WP_001918120.1 2931397..2933232(-) (recQ) [Vibrio cholerae C6706]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATTCGTTATCTGGAAACTCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCAGGGATGGATGCCGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGTCGCGCAGGGCGTGATGGTTTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTATTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGTTGCGCGGCATGCAAAACATCCGCATTCGCGAACATG
GTCACGACAAAATTACCACTTATGGGATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCTCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAACTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394