Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E8M03_RS05070 Genome accession   NZ_CP039448
Coordinates   1017512..1018498 (+) Length   328 a.a.
NCBI ID   WP_000959296.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VGC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012512..1023498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M03_RS05050 (E8M03_05100) - 1012950..1014596 (+) 1647 WP_000277723.1 IS1182-like element ISSau3 family transposase -
  E8M03_RS05055 (E8M03_05105) trpS 1014622..1015611 (-) 990 WP_000448937.1 tryptophan--tRNA ligase -
  E8M03_RS05060 (E8M03_05110) spxA 1015906..1016301 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  E8M03_RS05065 (E8M03_05115) mecA 1016672..1017391 (+) 720 WP_001217728.1 adaptor protein MecA -
  E8M03_RS05070 (E8M03_05120) coiA 1017512..1018498 (+) 987 WP_000959296.1 competence protein CoiA Machinery gene
  E8M03_RS05075 (E8M03_05125) pepF 1018546..1020354 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  E8M03_RS05080 (E8M03_05130) yjbH 1020814..1021620 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  E8M03_RS05085 (E8M03_05135) - 1021643..1022008 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  E8M03_RS05090 (E8M03_05140) - 1022112..1022705 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  E8M03_RS05095 (E8M03_05145) - 1022891..1023238 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38779.29 Da        Isoelectric Point: 9.6529

>NTDB_id=358660 E8M03_RS05070 WP_000959296.1 1017512..1018498(+) (coiA) [Staphylococcus aureus strain VGC1]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQFLQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=358660 E8M03_RS05070 WP_000959296.1 1017512..1018498(+) (coiA) [Staphylococcus aureus strain VGC1]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGTTTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963

Multiple sequence alignment