Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GTF72_RS07510 Genome accession   NZ_CP047295
Coordinates   1643182..1643562 (+) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae C6706     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638182..1648562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTF72_RS07485 (GTF72_07490) - 1638774..1639430 (+) 657 WP_000974695.1 HEAT repeat domain-containing protein -
  GTF72_RS07490 (GTF72_07495) - 1639441..1640286 (+) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  GTF72_RS07495 (GTF72_07500) - 1640286..1640657 (+) 372 WP_000757478.1 response regulator -
  GTF72_RS07500 (GTF72_07505) - 1640666..1642939 (+) 2274 WP_001178898.1 chemotaxis protein CheA -
  GTF72_RS07505 (GTF72_07510) - 1642929..1643189 (+) 261 WP_001143862.1 hypothetical protein -
  GTF72_RS07510 (GTF72_07515) pilL-C 1643182..1643562 (+) 381 WP_000045526.1 response regulator Machinery gene
  GTF72_RS07515 (GTF72_07520) - 1643570..1644805 (+) 1236 WP_000621946.1 methyl-accepting chemotaxis protein -
  GTF72_RS07520 (GTF72_07525) - 1644860..1645174 (-) 315 WP_000312387.1 multidrug efflux SMR transporter -
  GTF72_RS07525 (GTF72_07530) - 1645320..1646834 (-) 1515 WP_000411504.1 deoxyribodipyrimidine photo-lyase -
  GTF72_RS07530 (GTF72_07535) - 1646990..1648396 (-) 1407 WP_000545341.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=358639 GTF72_RS07510 WP_000045526.1 1643182..1643562(+) (pilL-C) [Vibrio cholerae C6706]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=358639 GTF72_RS07510 WP_000045526.1 1643182..1643562(+) (pilL-C) [Vibrio cholerae C6706]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389

Multiple sequence alignment