Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F3052_RS05265 Genome accession   NZ_CP047277
Coordinates   1092947..1093462 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain N18-04097     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087947..1098462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3052_RS05220 (F3052_05230) csrA 1088534..1088719 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F3052_RS05250 (F3052_05260) yqaB 1090177..1090743 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F3052_RS05255 (F3052_05265) yqaA 1090740..1091168 (+) 429 WP_001287454.1 YqaA family protein -
  F3052_RS05260 (F3052_05270) gshA 1091241..1092797 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  F3052_RS05265 (F3052_05275) luxS 1092947..1093462 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  F3052_RS05270 (F3052_05280) emrB 1093526..1095064 (-) 1539 WP_016232280.1 multidrug efflux MFS transporter permease subunit EmrB -
  F3052_RS05275 (F3052_05285) emrA 1095081..1096253 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F3052_RS05280 (F3052_05290) emrR 1096380..1096910 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F3052_RS05285 (F3052_05295) ygaH 1097001..1097336 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  F3052_RS05290 (F3052_05300) ygaZ 1097326..1098063 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=358543 F3052_RS05265 WP_001130211.1 1092947..1093462(+) (luxS) [Escherichia coli strain N18-04097]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=358543 F3052_RS05265 WP_001130211.1 1092947..1093462(+) (luxS) [Escherichia coli strain N18-04097]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731