Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GRI05_RS02175 Genome accession   NZ_CP047248
Coordinates   428985..429761 (+) Length   258 a.a.
NCBI ID   WP_012774987.1    Uniprot ID   A0A0H3N2A2
Organism   Streptococcus suis strain LSM178     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 423985..434761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI05_RS10405 - 427107..427310 (-) 204 Protein_375 transposase -
  GRI05_RS02170 (GRI05_02225) rlmD 427595..428947 (-) 1353 WP_011922004.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  GRI05_RS02175 (GRI05_02230) recX 428985..429761 (+) 777 WP_012774987.1 recombination regulator RecX Regulator
  GRI05_RS02180 (GRI05_02235) - 429837..430370 (+) 534 WP_004194106.1 nucleoside tri-diphosphate phosphatase -
  GRI05_RS02185 (GRI05_02240) - 430428..430745 (+) 318 WP_004194104.1 DUF960 domain-containing protein -
  GRI05_RS02190 (GRI05_02245) - 430845..431576 (+) 732 WP_012774988.1 GntR family transcriptional regulator -
  GRI05_RS02195 (GRI05_02250) - 431716..432426 (-) 711 WP_004194099.1 GntR family transcriptional regulator -
  GRI05_RS02200 (GRI05_02255) - 432633..434405 (+) 1773 WP_011922008.1 glycoside hydrolase family 35 protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30372.90 Da        Isoelectric Point: 9.3979

>NTDB_id=358458 GRI05_RS02175 WP_012774987.1 428985..429761(+) (recX) [Streptococcus suis strain LSM178]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSNYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKTLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYEAAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=358458 GRI05_RS02175 WP_012774987.1 428985..429761(+) (recX) [Streptococcus suis strain LSM178]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTAATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAAACGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGTTT
TTCTTATGAGGCGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364

Multiple sequence alignment