Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GRT08_RS18855 Genome accession   NZ_CP047234
Coordinates   3809268..3809957 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3804268..3814957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS18835 (GRT08_18590) - 3805172..3805519 (-) 348 WP_071392482.1 YxeA family protein -
  GRT08_RS18840 (GRT08_18595) yxdM 3805533..3807401 (-) 1869 WP_146283924.1 ABC transporter permease YxdM -
  GRT08_RS18845 (GRT08_18600) yxdL 3807376..3808149 (-) 774 WP_173612903.1 ABC transporter ATP-binding protein YxdL -
  GRT08_RS18850 (GRT08_18605) yxdK 3808294..3809271 (-) 978 WP_377802918.1 two-component system sensor histidine kinase YxdK -
  GRT08_RS18855 (GRT08_18610) braR 3809268..3809957 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  GRT08_RS18860 (GRT08_18615) iolJ 3810065..3810937 (-) 873 WP_264101249.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GRT08_RS18865 (GRT08_18620) iolI 3810940..3811782 (-) 843 WP_377802919.1 2-keto-myo-inositol isomerase -
  GRT08_RS18870 (GRT08_18625) - 3811870..3812739 (-) 870 WP_071392487.1 sugar phosphate isomerase/epimerase family protein -
  GRT08_RS18875 (GRT08_18630) - 3812758..3813792 (-) 1035 WP_071392488.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=358418 GRT08_RS18855 WP_004393241.1 3809268..3809957(-) (braR) [Bacillus amyloliquefaciens strain FJ4]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=358418 GRT08_RS18855 WP_004393241.1 3809268..3809957(-) (braR) [Bacillus amyloliquefaciens strain FJ4]
TTGAATAAAATCATGATAGTAGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGTCGGGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment