Detailed information NTG0358413

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GRT08_RS17515
• Genome accession: NZ_CP047234
• Coordinates: 3552170..3553300 (-)
• Length: 376 a.a.
• NCBI ID: WP_007407584.1
• Uniprot ID: A7Z9N9
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3547170..3558300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS17485 (GRT08_17260)	-	3548015..3548419 (-)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-
GRT08_RS17490 (GRT08_17265)	ureC	3548560..3550269 (-)	1710	WP_014305996.1	urease subunit alpha	-
GRT08_RS17495 (GRT08_17270)	ureB	3550266..3550640 (-)	375	WP_003151199.1	urease subunit beta	-
GRT08_RS17500 (GRT08_17275)	ureA	3550637..3550954 (-)	318	WP_003151198.1	urease subunit gamma	-
GRT08_RS17505 (GRT08_17280)	-	3551307..3551495 (-)	189	WP_003151197.1	CsbD family protein	-
GRT08_RS17510 (GRT08_17285)	-	3551569..3552048 (-)	480	WP_065982538.1	hypothetical protein	-
GRT08_RS17515 (GRT08_17290)	rapC	3552170..3553300 (-)	1131	WP_007407584.1	tetratricopeptide repeat protein	Regulator
GRT08_RS17520 (GRT08_17295)	moaA	3553491..3554516 (-)	1026	WP_012118655.1	GTP 3',8-cyclase MoaA	-
GRT08_RS17525 (GRT08_17300)	fdhD	3554534..3555322 (-)	789	WP_014306001.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
GRT08_RS17530	-	3555417..3555581 (-)	165	WP_003151191.1	hypothetical protein	-
GRT08_RS17535 (GRT08_17305)	-	3555668..3556348 (-)	681	WP_377802879.1	VWA domain-containing protein	-
GRT08_RS17540 (GRT08_17310)	-	3556659..3557345 (-)	687	WP_003151188.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.03 Da
• Isoelectric Point: 5.3221

>NTDB_id=358413 GRT08_RS17515 WP_007407584.1 3552170..3553300(-) (rapC) [Bacillus amyloliquefaciens strain FJ4]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=358413 GRT08_RS17515 WP_007407584.1 3552170..3553300(-) (rapC) [Bacillus amyloliquefaciens strain FJ4]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGTATATCAGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGAAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATTCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

3D structure

• AlphaFold DB: A7Z9N9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399