Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   GRT08_RS15945 Genome accession   NZ_CP047234
Coordinates   3212276..3214591 (-) Length   771 a.a.
NCBI ID   WP_320562538.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3207276..3219591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS15935 (GRT08_15710) cysI 3208550..3210265 (-) 1716 WP_052827842.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  GRT08_RS15940 (GRT08_15715) - 3210293..3212101 (-) 1809 WP_202735716.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  GRT08_RS15945 (GRT08_15720) helD 3212276..3214591 (-) 2316 WP_320562538.1 RNA polymerase recycling motor HelD Machinery gene
  GRT08_RS15950 (GRT08_15725) - 3214765..3215373 (-) 609 WP_007410017.1 trimeric intracellular cation channel family protein -
  GRT08_RS15955 (GRT08_15730) - 3215596..3216396 (+) 801 WP_024085792.1 zinc-dependent metalloprotease -
  GRT08_RS15960 (GRT08_15735) - 3216431..3216850 (-) 420 WP_101562429.1 disulfide oxidoreductase -
  GRT08_RS15965 (GRT08_15740) - 3216840..3217511 (-) 672 WP_071392275.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87869.68 Da        Isoelectric Point: 5.6697

>NTDB_id=358401 GRT08_RS15945 WP_320562538.1 3212276..3214591(-) (helD) [Bacillus amyloliquefaciens strain FJ4]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEEGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAIAYKASSAFQALIDRYAGSLSGSGLICKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLAAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTGNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVM
RTDTENARQEQLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYNSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=358401 GRT08_RS15945 WP_320562538.1 3212276..3214591(-) (helD) [Bacillus amyloliquefaciens strain FJ4]
ATGGCAAAACGTGATAAAGAGTGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAACTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGTTTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAGAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTCATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGTGATGAAAAAAGCAAATATCTCATCGTTCAGGGGGCCGCCGGGAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTTAACAGTTATGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGGACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCATCAGCTTTCCAGGCCCTGATTGACCG
CTATGCCGGCTCGCTTTCCGGCTCGGGCCTGATATGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GCCTGCTTGCCGCCATTATTGTCGGGAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CGGAAACGCATTTGCAGAACGGTCGCTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGCTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACATATATTCAA
AGCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTATG
CGGACGGATACAGAAAATGCGCGGCAGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCAGTCAGTGCCGAGAGCGGTGTCCGCTTGATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGACGCCTCTGCTGCCCAGTACAATAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATTTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTTTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(601-685)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

67.013

99.87

0.669

Multiple sequence alignment