Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   GRT08_RS14300 Genome accession   NZ_CP047234
Coordinates   2915470..2916165 (-) Length   231 a.a.
NCBI ID   WP_014305616.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2910470..2921165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS14280 (GRT08_14070) - 2910861..2911571 (-) 711 WP_015418040.1 TIGR02206 family membrane protein -
  GRT08_RS14285 (GRT08_14075) - 2911678..2913618 (-) 1941 WP_015418041.1 FtsX-like permease family protein -
  GRT08_RS14290 (GRT08_14080) - 2913615..2914370 (-) 756 WP_015387828.1 ABC transporter ATP-binding protein -
  GRT08_RS14295 (GRT08_14085) - 2914473..2915477 (-) 1005 WP_071391470.1 sensor histidine kinase -
  GRT08_RS14300 (GRT08_14090) braR 2915470..2916165 (-) 696 WP_014305616.1 response regulator transcription factor Regulator
  GRT08_RS14305 (GRT08_14095) - 2916229..2917539 (-) 1311 WP_003152283.1 ABC transporter permease -
  GRT08_RS14310 (GRT08_14100) - 2917529..2918224 (-) 696 WP_003152281.1 ABC transporter ATP-binding protein -
  GRT08_RS14315 (GRT08_14105) - 2918240..2919223 (-) 984 WP_377802796.1 ABC transporter permease -
  GRT08_RS14320 (GRT08_14110) - 2919260..2920246 (-) 987 WP_071391468.1 ABC transporter permease -

Sequence


Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1196

>NTDB_id=358391 GRT08_RS14300 WP_014305616.1 2915470..2916165(-) (braR) [Bacillus amyloliquefaciens strain FJ4]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=358391 GRT08_RS14300 WP_014305616.1 2915470..2916165(-) (braR) [Bacillus amyloliquefaciens strain FJ4]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCATGGAATAAAGGATTTCAGCCGGGTCATCCGGGAGTTTACCGAAATCAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCACCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAACAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385


Multiple sequence alignment