Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   SB21_RS17940 Genome accession   NZ_CP039380
Coordinates   3594335..3594454 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL-K103     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589335..3599454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS17915 (SB21_17915) - 3589685..3590197 (+) 513 Protein_3435 bacteriocin biosynthesis protein AlbG -
  SB21_RS17920 (SB21_17920) - 3590204..3591580 (-) 1377 WP_039063793.1 YncE family protein -
  SB21_RS17925 (SB21_17925) - 3591620..3592975 (-) 1356 WP_039063794.1 YncE family protein -
  SB21_RS17935 (SB21_17935) rapF 3593206..3594351 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  SB21_RS17940 (SB21_17940) phrF 3594335..3594454 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SB21_RS17945 (SB21_17945) - 3594651..3594854 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  SB21_RS17950 (SB21_17950) - 3594868..3595071 (+) 204 WP_007407641.1 hypothetical protein -
  SB21_RS17955 (SB21_17955) - 3595106..3595291 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  SB21_RS17960 (SB21_17960) - 3595477..3595758 (+) 282 WP_007407643.1 hypothetical protein -
  SB21_RS17965 (SB21_17965) - 3595802..3596314 (+) 513 WP_007407644.1 stage II sporulation protein M -
  SB21_RS17975 (SB21_17975) - 3596905..3597123 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  SB21_RS17980 (SB21_17980) speB 3597291..3598163 (-) 873 WP_007614448.1 agmatinase -
  SB21_RS17985 (SB21_17985) speE 3598222..3599052 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=358376 SB21_RS17940 WP_015240778.1 3594335..3594454(+) (phrF) [Bacillus velezensis strain LPL-K103]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=358376 SB21_RS17940 WP_015240778.1 3594335..3594454(+) (phrF) [Bacillus velezensis strain LPL-K103]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
AAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment