Detailed information NTG0358377

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: GRT08_RS12935
• Genome accession: NZ_CP047234
• Coordinates: 2638775..2640043 (+)
• Length: 422 a.a.
• NCBI ID: WP_003152729.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2633775..2645043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS12915 (GRT08_12725)	-	2635146..2635766 (-)	621	WP_148661870.1	lipopolysaccharide assembly protein LapB	-
GRT08_RS12920 (GRT08_12730)	mnmA	2635854..2636969 (-)	1116	WP_058906210.1	tRNA 2-thiouridine(34) synthase MnmA	-
GRT08_RS12925 (GRT08_12735)	-	2637006..2638145 (-)	1140	WP_058906211.1	cysteine desulfurase family protein	-
GRT08_RS12930 (GRT08_12740)	cymR	2638164..2638580 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
GRT08_RS12935 (GRT08_12745)	rarA	2638775..2640043 (+)	1269	WP_003152729.1	replication-associated recombination protein A	Machinery gene
GRT08_RS12940 (GRT08_12750)	-	2640119..2640883 (-)	765	WP_003152728.1	ThiF family adenylyltransferase	-
GRT08_RS12950 (GRT08_12760)	aspS	2641211..2642989 (-)	1779	WP_166706095.1	aspartate--tRNA ligase	-
GRT08_RS12955 (GRT08_12765)	hisS	2643004..2644278 (-)	1275	WP_101562309.1	histidine--tRNA ligase	-
GRT08_RS12960 (GRT08_12770)	-	2644635..2644805 (-)	171	WP_094247699.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46660.57 Da
• Isoelectric Point: 8.5446

>NTDB_id=358377 GRT08_RS12935 WP_003152729.1 2638775..2640043(+) (rarA) [Bacillus amyloliquefaciens strain FJ4]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=358377 GRT08_RS12935 WP_003152729.1 2638775..2640043(+) (rarA) [Bacillus amyloliquefaciens strain FJ4]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGACTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTC
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACTGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCTCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908