Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   GRT08_RS11055 Genome accession   NZ_CP047234
Coordinates   2255353..2256843 (-) Length   496 a.a.
NCBI ID   WP_039063272.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250353..2261843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS11025 (GRT08_10860) gudB 2250430..2251704 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  GRT08_RS11030 (GRT08_10865) - 2251865..2252449 (-) 585 WP_003153412.1 genetic competence negative regulator -
  GRT08_RS11035 (GRT08_10870) - 2252601..2253389 (-) 789 WP_071391680.1 metallophosphoesterase -
  GRT08_RS11040 (GRT08_10875) - 2253476..2253934 (-) 459 WP_007409443.1 YpbF family protein -
  GRT08_RS11045 (GRT08_10880) - 2254003..2254773 (-) 771 WP_038464022.1 LysM peptidoglycan-binding domain-containing protein -
  GRT08_RS11050 (GRT08_10885) - 2254751..2255338 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  GRT08_RS11055 (GRT08_10890) recS 2255353..2256843 (-) 1491 WP_039063272.1 ATP-dependent DNA helicase RecQ Machinery gene
  GRT08_RS11060 (GRT08_10895) - 2256836..2257894 (-) 1059 WP_032866329.1 helix-turn-helix domain-containing protein -
  GRT08_RS11065 (GRT08_10900) - 2258163..2258411 (+) 249 WP_003153403.1 ferredoxin -
  GRT08_RS11070 (GRT08_10905) - 2258553..2259125 (-) 573 WP_007409438.1 ECF transporter S component -
  GRT08_RS11075 (GRT08_10910) serA 2259614..2261191 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55953.01 Da        Isoelectric Point: 6.3781

>NTDB_id=358357 GRT08_RS11055 WP_039063272.1 2255353..2256843(-) (recS) [Bacillus amyloliquefaciens strain FJ4]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVSVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLREELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERLEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=358357 GRT08_RS11055 WP_039063272.1 2255353..2256843(-) (recS) [Bacillus amyloliquefaciens strain FJ4]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGG
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCTCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCAGTGCGTCATCTTTATTCAGTCAATCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGGAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAACGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCGGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTAGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685

Multiple sequence alignment