Detailed information NTG0358340

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GRT08_RS08190
• Genome accession: NZ_CP047234
• Coordinates: 1608787..1609776 (+)
• Length: 329 a.a.
• NCBI ID: WP_003154301.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1603787..1614776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS08175 (GRT08_08060)	acpP	1603984..1604217 (+)	234	WP_003154310.1	acyl carrier protein	-
GRT08_RS08180 (GRT08_08065)	rncS	1604356..1605105 (+)	750	WP_003154303.1	ribonuclease III	-
GRT08_RS08185 (GRT08_08070)	smc	1605207..1608767 (+)	3561	WP_077722190.1	chromosome segregation protein SMC	-
GRT08_RS08190 (GRT08_08075)	pilA	1608787..1609776 (+)	990	WP_003154301.1	signal recognition particle-docking protein FtsY	Machinery gene
GRT08_RS08195 (GRT08_08080)	-	1609860..1610630 (+)	771	WP_031378744.1	phosphotransferase family protein	-
GRT08_RS08200 (GRT08_08085)	-	1610750..1611082 (+)	333	WP_003154299.1	putative DNA-binding protein	-
GRT08_RS08205 (GRT08_08090)	ffh	1611096..1612436 (+)	1341	WP_003154298.1	signal recognition particle protein	-
GRT08_RS08210 (GRT08_08095)	rpsP	1612542..1612814 (+)	273	WP_003154296.1	30S ribosomal protein S16	-
GRT08_RS08215 (GRT08_08100)	-	1612814..1613059 (+)	246	WP_007611392.1	KH domain-containing protein	-
GRT08_RS08220 (GRT08_08105)	-	1613150..1613536 (+)	387	WP_003154291.1	YlqD family protein	-
GRT08_RS08225 (GRT08_08110)	rimM	1613541..1614065 (+)	525	WP_003154290.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36096.28 Da
• Isoelectric Point: 5.0098

>NTDB_id=358340 GRT08_RS08190 WP_003154301.1 1608787..1609776(+) (pilA) [Bacillus amyloliquefaciens strain FJ4]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide

• Length: 990 bp

>NTDB_id=358340 GRT08_RS08190 WP_003154301.1 1608787..1609776(+) (pilA) [Bacillus amyloliquefaciens strain FJ4]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTCGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTCATGGAGCTGATTGATGAGCTCAAAAAAGAAGTG
AAGCTGAAAAATATCCAGGACCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGTGA
CGAACAGATTTCTGAATTAAATATTCAGGACGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAGCTTGCCCATAAGCTGAAGAATGAAGGCAAATCGGTTGTGCTCGCTGCCGGAGACACCTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGAGAGCGTACAGGCGTGCCTGTCATTAAGCAGGCTGCCGGAAGCGACCC
TGCGGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTTAACTTAATGAAAGAGCTTGAAAAGGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCTCCGCAT
GAGGTTCTCCTCGCGCTTGACGCGACGACAGGTCAGAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCATTAACGAAGCTTGACGGCACCGCAAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CCGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCGGATTTAGTTGAAAAAGCCGAGGATTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (121-320)

• SRP54-type protein, helical bundle domain (SRP54_N) (33-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	45.333	91.185	0.413