Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SB21_RS07250 Genome accession   NZ_CP039380
Coordinates   1367519..1367983 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain LPL-K103     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362519..1372983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS07230 (SB21_07230) - 1363000..1364820 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  SB21_RS07235 (SB21_07235) - 1364845..1366014 (-) 1170 WP_015417364.1 aminotransferase A -
  SB21_RS19720 - 1366215..1366376 (-) 162 WP_007409608.1 hypothetical protein -
  SB21_RS07245 (SB21_07245) cheV 1366565..1367476 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  SB21_RS07250 (SB21_07250) kre 1367519..1367983 (-) 465 WP_003154622.1 YkyB family protein Regulator
  SB21_RS07255 (SB21_07255) - 1368106..1369398 (-) 1293 WP_007611093.1 MFS transporter -
  SB21_RS07260 (SB21_07260) - 1369474..1369968 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  SB21_RS07265 (SB21_07265) - 1370043..1370906 (-) 864 WP_015239758.1 metallophosphoesterase -
  SB21_RS07270 (SB21_07270) fadH 1371051..1371814 (+) 764 Protein_1364 2,4-dienoyl-CoA reductase -
  SB21_RS07275 (SB21_07275) - 1371928..1372476 (+) 549 WP_039062994.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=358335 SB21_RS07250 WP_003154622.1 1367519..1367983(-) (kre) [Bacillus velezensis strain LPL-K103]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=358335 SB21_RS07250 WP_003154622.1 1367519..1367983(-) (kre) [Bacillus velezensis strain LPL-K103]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment