Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GRT08_RS07720 Genome accession   NZ_CP047234
Coordinates   1508333..1508782 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503333..1513782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS07680 (GRT08_07565) ctaE 1503464..1504087 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  GRT08_RS07685 (GRT08_07570) ctaF 1504090..1504422 (+) 333 WP_015388278.1 cytochrome c oxidase subunit IVB -
  GRT08_RS07690 (GRT08_07575) ctaG 1504447..1505331 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  GRT08_RS07695 (GRT08_07580) - 1505365..1505724 (-) 360 WP_007409688.1 YugN family protein -
  GRT08_RS07700 (GRT08_07585) - 1505865..1506308 (+) 444 WP_003154478.1 CBS domain-containing protein -
  GRT08_RS07705 (GRT08_07590) - 1506393..1507433 (+) 1041 WP_003154477.1 CAP domain-containing protein -
  GRT08_RS07710 (GRT08_07595) - 1507597..1508007 (+) 411 WP_071391875.1 YlbD family protein -
  GRT08_RS07715 (GRT08_07600) - 1508023..1508262 (+) 240 WP_003154475.1 YlbE-like family protein -
  GRT08_RS07720 (GRT08_07605) ylbF 1508333..1508782 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  GRT08_RS07725 (GRT08_07610) - 1508841..1509113 (+) 273 WP_071392581.1 YlbG family protein -
  GRT08_RS07730 (GRT08_07615) - 1509204..1509413 (+) 210 WP_071391874.1 hypothetical protein -
  GRT08_RS07735 (GRT08_07620) rsmD 1509413..1509967 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GRT08_RS07740 (GRT08_07625) coaD 1509972..1510454 (+) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  GRT08_RS07745 (GRT08_07630) ylbJ 1510473..1511699 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  GRT08_RS07750 (GRT08_07635) - 1511879..1512658 (+) 780 WP_015388274.1 patatin family protein -
  GRT08_RS07755 (GRT08_07640) sepM 1512664..1513686 (+) 1023 WP_071391872.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=358334 GRT08_RS07720 WP_003154472.1 1508333..1508782(+) (ylbF) [Bacillus amyloliquefaciens strain FJ4]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=358334 GRT08_RS07720 WP_003154472.1 1508333..1508782(+) (ylbF) [Bacillus amyloliquefaciens strain FJ4]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879