Detailed information NTG0358329

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: GRT08_RS07030
• Genome accession: NZ_CP047234
• Coordinates: 1333384..1335480 (-)
• Length: 698 a.a.
• NCBI ID: WP_377803111.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 1328384..1340480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS07005 (GRT08_06905)	-	1328974..1329234 (+)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-
GRT08_RS07010 (GRT08_06910)	-	1329445..1330962 (-)	1518	WP_148661862.1	ATP-binding protein	-
GRT08_RS07015 (GRT08_06915)	-	1331161..1331607 (+)	447	WP_003154686.1	MarR family winged helix-turn-helix transcriptional regulator	-
GRT08_RS07020 (GRT08_06920)	motB	1331643..1332428 (-)	786	WP_069473375.1	flagellar motor protein MotB	-
GRT08_RS07025 (GRT08_06925)	motA	1332400..1333215 (-)	816	WP_003154684.1	flagellar motor stator protein MotA	-
GRT08_RS07030 (GRT08_06930)	clpE	1333384..1335480 (-)	2097	WP_377803111.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
GRT08_RS07035 (GRT08_06935)	-	1335882..1336919 (+)	1038	WP_070081724.1	hypothetical protein	-
GRT08_RS07040 (GRT08_06940)	-	1337017..1338138 (+)	1122	WP_071391920.1	hypothetical protein	-
GRT08_RS07045 (GRT08_06945)	queC	1338388..1339047 (+)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
GRT08_RS07050 (GRT08_06950)	queD	1339048..1339488 (+)	441	WP_128574655.1	6-carboxytetrahydropterin synthase QueD	-
GRT08_RS07055 (GRT08_06955)	queE	1339481..1340212 (+)	732	WP_003154676.1	7-carboxy-7-deazaguanine synthase QueE	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77713.77 Da
• Isoelectric Point: 5.3652

>NTDB_id=358329 GRT08_RS07030 WP_377803111.1 1333384..1335480(-) (clpE) [Bacillus amyloliquefaciens strain FJ4]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGGPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALREENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVMEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=358329 GRT08_RS07030 WP_377803111.1 1333384..1335480(-) (clpE) [Bacillus amyloliquefaciens strain FJ4]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGGGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAACTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTCATCTTGTT
CATTGATGAGATTCACCTTCTCGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCCC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCGGGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCTTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGCGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGTGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGTGCCGGTTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGACGAGATTGAAAAAGCCCATCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACTAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCATGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTCACCGATGAT
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCCGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
AGAGGACGAAATGACAGATCTTCTATTGGATGACAACGAAATCAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

• AAA lid domain (AAA_lid_9) (252-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	56.871	100	0.599
clpC	Lactococcus lactis subsp. cremoris KW2	56.54	100	0.595
clpE	Streptococcus pneumoniae Rx1	56.131	100	0.59
clpE	Streptococcus pneumoniae R6	56.131	100	0.59
clpE	Streptococcus pneumoniae D39	56.131	100	0.59
clpE	Streptococcus pneumoniae TIGR4	56.131	100	0.59
clpC	Bacillus subtilis subsp. subtilis str. 168	54.075	91.404	0.494
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.519	90.544	0.421
clpC	Streptococcus thermophilus LMD-9	44	93.123	0.41
clpC	Streptococcus thermophilus LMG 18311	43.692	93.123	0.407
clpC	Streptococcus pneumoniae TIGR4	45.88	88.682	0.407
clpC	Streptococcus pneumoniae Rx1	45.88	88.682	0.407
clpC	Streptococcus pneumoniae D39	45.88	88.682	0.407
clpC	Streptococcus mutans UA159	44.553	88.109	0.393