Detailed information NTG0358327

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: SB21_RS05860
• Genome accession: NZ_CP039380
• Coordinates: 1112832..1113785 (+)
• Length: 317 a.a.
• NCBI ID: WP_007409125.1
• Uniprot ID: A7Z3B8
• Organism: Bacillus velezensis strain LPL-K103
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1107832..1118785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SB21_RS05830 (SB21_05830)	argF	1109651..1110621 (+)	971	Protein_1079	ornithine carbamoyltransferase	-
SB21_RS05835 (SB21_05835)	-	1110697..1110876 (+)	180	WP_003155070.1	YjzC family protein	-
SB21_RS05840 (SB21_05840)	-	1110913..1111098 (-)	186	WP_007409129.1	YjzD family protein	-
SB21_RS05850 (SB21_05850)	-	1111359..1112093 (+)	735	WP_039062884.1	hypothetical protein	-
SB21_RS05855 (SB21_05855)	-	1112176..1112742 (+)	567	WP_039062886.1	hypothetical protein	-
SB21_RS05860 (SB21_05860)	med	1112832..1113785 (+)	954	WP_007409125.1	BMP family ABC transporter substrate-binding protein	Regulator
SB21_RS05865 (SB21_05865)	comZ	1113798..1113989 (+)	192	WP_007409124.1	ComZ family protein	Regulator
SB21_RS05870 (SB21_05870)	-	1114018..1114236 (-)	219	WP_007409123.1	hypothetical protein	-
SB21_RS05875 (SB21_05875)	-	1114403..1115341 (+)	939	WP_007409122.1	beta-ketoacyl-ACP synthase III	-
SB21_RS05880 (SB21_05880)	fabF	1115364..1116602 (+)	1239	WP_020955629.1	beta-ketoacyl-ACP synthase II	-
SB21_RS05885 (SB21_05885)	-	1116685..1117470 (+)	786	WP_020955630.1	DUF2268 domain-containing protein	-
SB21_RS05890 (SB21_05890)	-	1117644..1118630 (+)	987	WP_039062887.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35342.99 Da
• Isoelectric Point: 4.6686

>NTDB_id=358327 SB21_RS05860 WP_007409125.1 1112832..1113785(+) (med) [Bacillus velezensis strain LPL-K103]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide

• Length: 954 bp

>NTDB_id=358327 SB21_RS05860 WP_007409125.1 1112832..1113785(+) (med) [Bacillus velezensis strain LPL-K103]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACTATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTTGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A7Z3B8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	78.549	100	0.785