Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | SB21_RS00250 | Genome accession | NZ_CP039380 |
| Coordinates | 45544..45834 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain LPL-K103 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 40544..50834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SB21_RS00210 (SB21_00210) | darA | 40559..40888 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| SB21_RS00215 (SB21_00215) | - | 40901..41341 (+) | 441 | WP_004264730.1 | DUF327 family protein | - |
| SB21_RS00220 (SB21_00220) | holB | 41353..42342 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| SB21_RS00225 (SB21_00225) | ricT | 42345..43172 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| SB21_RS00230 (SB21_00230) | yabA | 43187..43546 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| SB21_RS00235 (SB21_00235) | - | 43607..44350 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| SB21_RS00240 (SB21_00240) | - | 44337..44636 (+) | 300 | WP_038456669.1 | GIY-YIG nuclease family protein | - |
| SB21_RS00245 (SB21_00245) | rsmI | 44611..45492 (+) | 882 | WP_039062436.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| SB21_RS00250 (SB21_00250) | abrB | 45544..45834 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| SB21_RS00255 (SB21_00255) | metG | 46318..48309 (+) | 1992 | WP_020955208.1 | methionine--tRNA ligase | - |
| SB21_RS00260 (SB21_00260) | - | 48385..49152 (+) | 768 | WP_039062437.1 | TatD family hydrolase | - |
| SB21_RS00265 (SB21_00265) | - | 49287..50612 (+) | 1326 | WP_103715924.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=358309 SB21_RS00250 WP_169510469.1 45544..45834(-) (abrB) [Bacillus velezensis strain LPL-K103]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=358309 SB21_RS00250 WP_169510469.1 45544..45834(-) (abrB) [Bacillus velezensis strain LPL-K103]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |