Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GRT08_RS03930 Genome accession   NZ_CP047234
Coordinates   757729..758445 (+) Length   238 a.a.
NCBI ID   WP_031378880.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 752729..763445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS03900 (GRT08_03860) - 752908..753285 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  GRT08_RS03905 (GRT08_03865) - 753295..753726 (-) 432 WP_033574975.1 Hsp20/alpha crystallin family protein -
  GRT08_RS03910 (GRT08_03870) - 753742..753984 (-) 243 WP_003155595.1 spore germination protein -
  GRT08_RS03915 (GRT08_03875) - 753999..754259 (-) 261 WP_014417185.1 spore germination protein -
  GRT08_RS03920 (GRT08_03880) treP 754530..755945 (+) 1416 WP_020955500.1 PTS system trehalose-specific EIIBC component -
  GRT08_RS03925 (GRT08_03885) treC 756020..757705 (+) 1686 WP_033574976.1 alpha,alpha-phosphotrehalase -
  GRT08_RS03930 (GRT08_03890) treR 757729..758445 (+) 717 WP_031378880.1 trehalose operon repressor Regulator
  GRT08_RS03935 (GRT08_03895) - 758579..759244 (+) 666 WP_031378881.1 NAD(P)H-dependent oxidoreductase -
  GRT08_RS03940 (GRT08_03900) - 759280..760041 (-) 762 WP_031378882.1 YibE/F family protein -
  GRT08_RS03945 (GRT08_03905) - 760038..761177 (-) 1140 WP_033574977.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27573.57 Da        Isoelectric Point: 6.9762

>NTDB_id=358302 GRT08_RS03930 WP_031378880.1 757729..758445(+) (treR) [Bacillus amyloliquefaciens strain FJ4]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPQLTKAICEDS
IYEYLEGELGLSISYAQKEIVMEPAGEEDRKYLDLGGFSHMAIVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=358302 GRT08_RS03930 WP_031378880.1 757729..758445(+) (treR) [Bacillus amyloliquefaciens strain FJ4]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCAATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCATGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGATCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTCCAATATACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424