Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GRT08_RS00335 Genome accession   NZ_CP047234
Coordinates   60855..61085 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55855..66085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS00305 (GRT08_00305) ridA 56043..56423 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  GRT08_RS00310 (GRT08_00310) spoVG 56619..56912 (+) 294 WP_004264660.1 septation regulator SpoVG -
  GRT08_RS00315 (GRT08_00315) glmU 57104..58474 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GRT08_RS00320 (GRT08_00320) - 58496..59449 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  GRT08_RS00325 (GRT08_00325) - 59534..60142 (+) 609 WP_070081262.1 50S ribosomal protein L25/general stress protein Ctc -
  GRT08_RS00330 (GRT08_00330) pth 60227..60793 (+) 567 WP_025650338.1 aminoacyl-tRNA hydrolase -
  GRT08_RS00335 (GRT08_00335) subA/fin 60855..61085 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  GRT08_RS00340 (GRT08_00340) mfd 61155..64688 (+) 3534 WP_187954880.1 transcription-repair coupling factor -
  GRT08_RS00345 (GRT08_00345) spoVT 64825..65361 (+) 537 WP_070081264.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=358280 GRT08_RS00335 WP_004264650.1 60855..61085(+) (subA/fin) [Bacillus amyloliquefaciens strain FJ4]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=358280 GRT08_RS00335 WP_004264650.1 60855..61085(+) (subA/fin) [Bacillus amyloliquefaciens strain FJ4]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868