Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   E6B08_RS27975 Genome accession   NZ_CP039371
Coordinates   6037707..6038108 (-) Length   133 a.a.
NCBI ID   WP_136916932.1    Uniprot ID   -
Organism   Pseudomonas putida strain 1290     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6032707..6043108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6B08_RS27960 (E6B08_27960) - 6034671..6036695 (-) 2025 WP_238349372.1 methyl-accepting chemotaxis protein -
  E6B08_RS27965 (E6B08_27965) - 6036743..6037297 (-) 555 WP_136916930.1 chemotaxis protein CheW -
  E6B08_RS27970 (E6B08_27970) pilH 6037294..6037659 (-) 366 WP_136916931.1 twitching motility response regulator PilH -
  E6B08_RS27975 (E6B08_27975) pilG 6037707..6038108 (-) 402 WP_136916932.1 response regulator Regulator
  E6B08_RS27980 (E6B08_27980) gshB 6038317..6039270 (+) 954 WP_136916933.1 glutathione synthase -
  E6B08_RS27985 (E6B08_27985) - 6039362..6040267 (+) 906 WP_136916934.1 energy transducer TonB -
  E6B08_RS27990 (E6B08_27990) - 6040348..6040917 (+) 570 WP_136916935.1 YqgE/AlgH family protein -
  E6B08_RS27995 (E6B08_27995) ruvX 6040917..6041342 (+) 426 WP_008099990.1 Holliday junction resolvase RuvX -
  E6B08_RS28000 (E6B08_28000) pyrR 6041395..6041913 (+) 519 WP_136916936.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  E6B08_RS28005 (E6B08_28005) - 6041927..6042931 (+) 1005 WP_136916937.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14655.96 Da        Isoelectric Point: 6.4788

>NTDB_id=358230 E6B08_RS27975 WP_136916932.1 6037707..6038108(-) (pilG) [Pseudomonas putida strain 1290]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPQIIFVDVLMPRLDGYQTCAVIKHNSAFKDIP
VVLLSSRDGLFDKARGRVVGADRFLTKPFGKEELLDAIRAHVPGFAAHEQQAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=358230 E6B08_RS27975 WP_136916932.1 6037707..6038108(-) (pilG) [Pseudomonas putida strain 1290]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGCGAAGC
GGGCTGTGAAGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCGCAGATCATCTTCG
TCGATGTGCTGATGCCGCGCCTGGACGGTTACCAGACTTGCGCCGTGATCAAGCACAACAGTGCCTTCAAGGATATTCCG
GTGGTCCTCCTGTCGTCACGCGATGGCCTGTTCGACAAGGCCCGTGGCCGGGTGGTCGGCGCCGACCGGTTCCTCACCAA
GCCCTTCGGCAAGGAAGAACTGCTCGACGCGATCAGGGCCCACGTGCCCGGTTTCGCCGCTCACGAACAACAAGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.213

91.729

0.617

Multiple sequence alignment