Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   EA665_RS18575 Genome accession   NZ_CP039343
Coordinates   3840071..3841225 (+) Length   384 a.a.
NCBI ID   WP_024432434.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain TG31302     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3835071..3846225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA665_RS18550 (EA665_018550) - 3835221..3836435 (+) 1215 WP_001177944.1 oxygenase MpaB family protein -
  EA665_RS18555 (EA665_018555) - 3836506..3836712 (-) 207 WP_000182542.1 hypothetical protein -
  EA665_RS18560 (EA665_018560) - 3836766..3838880 (-) 2115 WP_001120668.1 TonB-dependent copper receptor -
  EA665_RS18565 (EA665_018565) - 3838953..3839381 (-) 429 WP_000231981.1 DUF2946 family protein -
  EA665_RS18570 (EA665_018570) def 3839418..3839948 (-) 531 WP_001196539.1 peptide deformylase -
  EA665_RS18575 (EA665_018575) tsaP 3840071..3841225 (+) 1155 WP_024432434.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  EA665_RS18580 (EA665_018580) dprA 3841246..3842376 (+) 1131 WP_031981044.1 DNA-processing protein DprA Machinery gene
  EA665_RS18585 (EA665_018585) - 3842427..3842996 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  EA665_RS18590 (EA665_018590) - 3843388..3844308 (-) 921 WP_000084546.1 DMT family transporter -
  EA665_RS18595 (EA665_018595) - 3844414..3845064 (-) 651 WP_085943488.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42346.33 Da        Isoelectric Point: 8.5909

>NTDB_id=358211 EA665_RS18575 WP_024432434.1 3840071..3841225(+) (tsaP) [Acinetobacter baumannii strain TG31302]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFIDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=358211 EA665_RS18575 WP_024432434.1 3840071..3841225(+) (tsaP) [Acinetobacter baumannii strain TG31302]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGGGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCATAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACCCAAGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTCTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99


Multiple sequence alignment