Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   EA665_RS18000 Genome accession   NZ_CP039343
Coordinates   3717828..3718154 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain TG31302     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712828..3723154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA665_RS17980 (EA665_017980) - 3712930..3713559 (-) 630 WP_000219974.1 FHA domain-containing protein -
  EA665_RS17985 (EA665_017985) gspD 3713600..3715876 (-) 2277 WP_001196437.1 type II secretion system secretin GspD -
  EA665_RS17990 (EA665_017990) - 3715918..3716754 (-) 837 WP_000870031.1 type II secretion system protein N -
  EA665_RS17995 (EA665_017995) gspN 3716754..3717497 (-) 744 WP_000730343.1 type II secretion system protein N -
  EA665_RS18000 (EA665_018000) hns 3717828..3718154 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  EA665_RS18005 (EA665_018005) - 3718349..3718789 (-) 441 WP_024432422.1 acyl-CoA thioesterase -
  EA665_RS18010 (EA665_018010) - 3718797..3719990 (-) 1194 WP_000681774.1 hypothetical protein -
  EA665_RS18015 (EA665_018015) - 3720000..3720839 (-) 840 WP_001230201.1 hypothetical protein -
  EA665_RS18020 (EA665_018020) - 3720848..3721615 (-) 768 WP_000897415.1 uroporphyrinogen-III synthase -
  EA665_RS18025 (EA665_018025) hemC 3721620..3722537 (-) 918 WP_031956197.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=358207 EA665_RS18000 WP_000801427.1 3717828..3718154(-) (hns) [Acinetobacter baumannii strain TG31302]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=358207 EA665_RS18000 WP_000801427.1 3717828..3718154(-) (hns) [Acinetobacter baumannii strain TG31302]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment