Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GSU80_RS02175 Genome accession   NZ_CP047231
Coordinates   465897..466502 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain BL21-AI     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460897..471502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSU80_RS02145 (GSU80_02145) rsmS 461602..461763 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  GSU80_RS02150 (GSU80_02150) priC 461777..462304 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  GSU80_RS02155 (GSU80_02155) ybaN 462374..462751 (+) 378 WP_001188905.1 DUF454 family protein -
  GSU80_RS02160 (GSU80_02160) apt 462904..463455 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GSU80_RS02165 (GSU80_02165) dnaX 463584..465515 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  GSU80_RS02170 (GSU80_02170) ybaB 465568..465897 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GSU80_RS02175 (GSU80_02175) recR 465897..466502 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GSU80_RS02180 (GSU80_02180) htpG 466612..468486 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  GSU80_RS02185 (GSU80_02185) adk 468667..469311 (+) 645 WP_001220233.1 adenylate kinase -
  GSU80_RS02190 (GSU80_02190) hemH 469547..470509 (+) 963 WP_001250117.1 ferrochelatase -
  GSU80_RS02195 (GSU80_02195) aes 470506..471465 (-) 960 WP_000801849.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=358201 GSU80_RS02175 WP_001195025.1 465897..466502(+) (recR) [Escherichia coli strain BL21-AI]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=358201 GSU80_RS02175 WP_001195025.1 465897..466502(+) (recR) [Escherichia coli strain BL21-AI]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443