Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GSF12_RS04405 Genome accession   NZ_CP047226
Coordinates   950848..952059 (+) Length   403 a.a.
NCBI ID   WP_416234268.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945848..957059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS04385 (GSF12_04385) - 946482..947420 (+) 939 WP_159374508.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  GSF12_RS04390 (GSF12_04390) - 947460..948932 (-) 1473 WP_159374509.1 M16 family metallopeptidase -
  GSF12_RS04395 (GSF12_04395) - 949015..950529 (-) 1515 WP_159374510.1 M16 family metallopeptidase -
  GSF12_RS04400 (GSF12_04400) - 950552..950728 (-) 177 WP_159374511.1 hypothetical protein -
  GSF12_RS04405 (GSF12_04405) pilA 950848..952059 (+) 1212 WP_416234268.1 signal recognition particle-docking protein FtsY Machinery gene
  GSF12_RS04410 (GSF12_04410) - 952061..952606 (+) 546 WP_201450440.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  GSF12_RS04415 (GSF12_04415) - 952626..955289 (-) 2664 WP_159374512.1 AAA family ATPase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43355.16 Da        Isoelectric Point: 5.1496

>NTDB_id=358166 GSF12_RS04405 WP_416234268.1 950848..952059(+) (pilA) [Moraxella osloensis strain YV1]
MSSNQFNNNASNKVVINFNNQPTNFDDATMPNLPVQDVPIIETPRIAKAAQTSTLQTPATPQSVSPMPQSQHQGQPAPTQ
QPSPNTAEPSAEPEQKGGWFSRMKQGLSKSRKNLTEGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLTEA
TARGDLIYSHSLYKALQKELTDILTPKVAPLVVDASTKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRA
AATEQLQVWGERNNIPVVAQGHGSDSASVIFDAIQSAKARGIDVLIADTAGRLQNKTHLMEELKKVIRVMQKADPTAPHE
SMIVLDAGTGQNALNQVEIFNEAVPLTGVTVTKLDGTAKGGVVFNIAENTNVPIRFIGVGEKIDDLRPFQADDFVKALFE
KDE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=358166 GSF12_RS04405 WP_416234268.1 950848..952059(+) (pilA) [Moraxella osloensis strain YV1]
ATGAGTAGCAACCAATTTAATAACAATGCTTCTAATAAGGTGGTAATTAATTTTAATAACCAACCGACTAATTTTGATGA
TGCTACGATGCCCAATCTGCCTGTGCAAGATGTGCCAATTATTGAAACGCCGCGTATCGCTAAAGCCGCCCAAACGTCAA
CACTACAAACACCTGCGACACCCCAATCTGTGTCACCAATGCCGCAAAGCCAGCACCAAGGACAGCCTGCACCCACACAG
CAGCCATCTCCCAATACGGCTGAGCCAAGCGCAGAACCTGAACAAAAAGGGGGCTGGTTTAGCCGCATGAAACAAGGCTT
ATCAAAGAGTCGTAAAAACTTGACCGAAGGCTTAACCAATATTTTGATTGGTGGTAAAGAAATTGATGATGAACTACTAG
AAGAAGTCGAAGACCAACTGTTGGTCGCCGACATTGGGGTGAATGCCACCAATCGCATTATCAAAAACTTGACCGAAGCC
ACTGCCCGCGGTGATTTGATTTATTCGCATTCACTGTATAAAGCGCTACAAAAAGAACTCACCGATATCTTGACACCCAA
AGTTGCACCGCTGGTGGTGGATGCTAGCACAAAACCGTTTGTCATCTTGGTCGTTGGGGTCAATGGTGTGGGTAAAACCA
CCACCATCGGTAAACTTGCCAAACGTCTGCAAGGTGAAGGAAAATCAGTGATGTTAGCAGCGGGTGATACGTTCCGTGCG
GCAGCCACCGAGCAATTGCAAGTTTGGGGGGAGCGCAATAATATCCCTGTTGTCGCCCAAGGTCATGGCTCAGACAGTGC
TTCGGTGATTTTTGATGCCATTCAATCTGCCAAAGCCCGTGGCATTGACGTGCTGATTGCCGATACCGCAGGGCGTCTAC
AAAATAAAACGCATTTGATGGAAGAGCTGAAAAAAGTGATTCGCGTCATGCAAAAAGCCGATCCGACAGCGCCGCATGAA
TCCATGATTGTGCTCGACGCGGGTACAGGACAAAATGCCCTAAATCAAGTAGAAATATTCAATGAAGCAGTGCCATTGAC
AGGCGTGACCGTCACCAAATTGGATGGCACCGCAAAAGGCGGCGTGGTATTTAATATCGCTGAAAACACCAACGTGCCGA
TTCGTTTTATTGGCGTGGGTGAAAAAATCGATGATTTGCGCCCATTTCAAGCCGATGATTTTGTCAAAGCGCTATTTGAA
AAAGACGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(199-399)

SRP54-type protein, helical bundle domain (SRP54_N)

(114-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

55.049

76.179

0.419