Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GSF12_RS01170 Genome accession   NZ_CP047226
Coordinates   250368..250730 (+) Length   120 a.a.
NCBI ID   WP_036592735.1    Uniprot ID   A0A0X8K6G7
Organism   Moraxella osloensis strain YV1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245368..255730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS01155 (GSF12_01155) - 247020..248270 (-) 1251 WP_201450416.1 efflux RND transporter periplasmic adaptor subunit -
  GSF12_RS01160 (GSF12_01160) - 248597..249478 (-) 882 WP_159374080.1 IS982 family transposase -
  GSF12_RS01165 (GSF12_01165) pilG 249747..250133 (+) 387 WP_159374081.1 twitching motility response regulator PilG Regulator
  GSF12_RS01170 (GSF12_01170) pilH 250368..250730 (+) 363 WP_036592735.1 response regulator Machinery gene
  GSF12_RS01175 (GSF12_01175) - 250736..251272 (+) 537 WP_159374082.1 chemotaxis protein CheW -
  GSF12_RS01180 (GSF12_01180) - 251695..252726 (+) 1032 Protein_222 methyl-accepting chemotaxis protein -
  GSF12_RS01185 (GSF12_01185) - 253101..253964 (+) 864 WP_159374084.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13700.74 Da        Isoelectric Point: 5.6757

>NTDB_id=358152 GSF12_RS01170 WP_036592735.1 250368..250730(+) (pilH) [Moraxella osloensis strain YV1]
MAKILVVDDSPSEMAKFRDILTRHQYEVIEAHTGDDGIQKANEFFPDVILMDVVMPEMNGFQATRKLTRDPKTSHIPVVI
ISTKNQETDRVWGKRQGARDYLSKPITEEALITVIRSVME

Nucleotide


Download         Length: 363 bp        

>NTDB_id=358152 GSF12_RS01170 WP_036592735.1 250368..250730(+) (pilH) [Moraxella osloensis strain YV1]
ATGGCCAAAATCTTAGTAGTTGACGATTCACCATCAGAAATGGCAAAATTTCGGGATATTTTGACCCGTCATCAGTACGA
AGTCATTGAAGCGCATACAGGCGATGATGGGATTCAAAAAGCCAATGAGTTTTTTCCAGACGTGATTTTGATGGATGTGG
TCATGCCAGAGATGAACGGCTTTCAAGCAACCCGCAAACTTACCCGTGACCCAAAAACCAGTCATATCCCTGTCGTCATC
ATCAGTACTAAAAATCAAGAAACTGACCGCGTATGGGGCAAGCGCCAAGGCGCACGAGATTATCTAAGTAAGCCGATTAC
AGAAGAAGCCTTAATCACTGTAATCCGTTCCGTGATGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8K6G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.655

99.167

0.383

Multiple sequence alignment