Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GSF12_RS00100 Genome accession   NZ_CP047226
Coordinates   22456..23559 (+) Length   367 a.a.
NCBI ID   WP_159373942.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17456..28559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS00080 (GSF12_00080) - 19332..20078 (-) 747 WP_159373939.1 glutathione peroxidase -
  GSF12_RS00085 (GSF12_00085) - 20358..20846 (+) 489 WP_036591734.1 YajQ family cyclic di-GMP-binding protein -
  GSF12_RS00090 (GSF12_00090) hisB 20926..21528 (-) 603 WP_159373940.1 imidazoleglycerol-phosphate dehydratase HisB -
  GSF12_RS00095 (GSF12_00095) def 21551..22081 (-) 531 WP_159373941.1 peptide deformylase -
  GSF12_RS00100 (GSF12_00100) tsaP 22456..23559 (+) 1104 WP_159373942.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GSF12_RS00105 (GSF12_00105) dprA 23725..24954 (+) 1230 WP_159375627.1 DNA-processing protein DprA Machinery gene
  GSF12_RS00110 (GSF12_00110) - 25004..25609 (+) 606 WP_159373943.1 L-threonylcarbamoyladenylate synthase -
  GSF12_RS00115 (GSF12_00115) grpE 25833..26414 (+) 582 WP_065253958.1 nucleotide exchange factor GrpE -
  GSF12_RS00120 (GSF12_00120) dnaK 26576..28498 (+) 1923 WP_159373944.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39501.46 Da        Isoelectric Point: 9.2151

>NTDB_id=358141 GSF12_RS00100 WP_159373942.1 22456..23559(+) (tsaP) [Moraxella osloensis strain YV1]
MTNYNTTTMKKLSFALLATLGMTVTSLAAANNPPPRIKADAPNRYVVKKGDTLWDISGKFLESPWRWKEIWATNKQIRNP
NLIYPKDVIILCVIKGQKLVGVDTGEGCAGIEKAMNAPVTTTTVVSAAGSIAAIPLTAIETWLERNIIVSPDDFKTTPYV
LASKDKNIITGVGNKIYAKGVPLIVGQRYGVYREGEPYVDPTTRKVIGLEVTQVAAGIVTSVASNGVSSIELKKSYGQEV
REGDRVFVEVGQYLPPAFYPKPASVTRGGRVIRILNSISSAGRDGVIAINLGTSQGAEPGDVLTVYQKGALVLDDYSSVK
GGAVRLPSEQIGHVMVFKAFNDISYAYVLDAEAPIHEQDFLLPAVGN

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=358141 GSF12_RS00100 WP_159373942.1 22456..23559(+) (tsaP) [Moraxella osloensis strain YV1]
ATGACAAACTATAACACCACGACAATGAAAAAATTATCCTTCGCTTTGTTGGCAACCCTAGGTATGACAGTGACTTCGTT
AGCCGCTGCTAACAACCCGCCACCTCGTATCAAAGCCGATGCGCCCAACCGTTATGTGGTAAAAAAAGGTGATACGCTTT
GGGATATCTCCGGTAAATTCTTAGAAAGTCCGTGGCGCTGGAAAGAAATTTGGGCGACCAATAAACAGATTCGTAATCCG
AATCTGATTTATCCAAAAGATGTGATTATCTTATGTGTGATTAAAGGGCAAAAATTGGTCGGTGTAGATACGGGGGAAGG
CTGTGCAGGCATTGAAAAAGCCATGAACGCGCCAGTCACCACAACCACAGTGGTAAGTGCTGCAGGTAGTATCGCTGCGA
TTCCTTTGACTGCCATTGAAACATGGCTTGAGCGCAATATCATCGTATCGCCTGATGACTTTAAAACTACCCCCTATGTG
CTGGCTTCAAAAGATAAAAACATTATCACAGGTGTCGGTAACAAAATCTATGCCAAAGGCGTGCCACTCATTGTGGGACA
ACGCTATGGCGTGTACCGTGAGGGCGAACCGTATGTTGACCCAACCACCCGTAAAGTCATCGGTCTTGAAGTCACCCAAG
TTGCCGCAGGTATCGTCACTAGCGTAGCATCAAACGGTGTTTCTAGTATCGAGCTTAAAAAATCGTATGGTCAAGAAGTG
CGCGAAGGTGACCGTGTATTTGTCGAAGTCGGTCAGTACTTGCCACCCGCGTTTTATCCAAAACCTGCCAGCGTTACCCG
TGGCGGTCGCGTGATTCGTATTTTAAACTCAATTAGTAGTGCGGGTCGAGATGGAGTGATTGCCATTAATTTGGGCACCA
GCCAAGGCGCTGAGCCAGGCGATGTGTTGACGGTTTATCAAAAAGGCGCTTTAGTGTTGGACGACTATTCATCCGTGAAA
GGTGGGGCAGTACGGTTGCCAAGTGAGCAAATCGGTCATGTGATGGTATTTAAAGCATTTAACGATATTAGCTACGCTTA
TGTACTTGATGCAGAAGCACCGATTCATGAGCAAGATTTTTTATTGCCTGCGGTCGGCAACTAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(45-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

41.848

100

0.42

Multiple sequence alignment