Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EA743_RS01785 Genome accession   NZ_CP039341
Coordinates   361777..362595 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain TG31986     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356777..367595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA743_RS01750 (EA743_001750) - 357360..357489 (-) 130 Protein_327 hypothetical protein -
  EA743_RS01755 (EA743_001755) rpoZ 357528..357806 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EA743_RS01760 (EA743_001760) gmk 357879..358508 (-) 630 WP_000015937.1 guanylate kinase -
  EA743_RS01765 (EA743_001765) ispH 358631..359581 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EA743_RS01770 (EA743_001770) fimU 359751..360224 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EA743_RS01775 (EA743_001775) pilV 360218..360778 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EA743_RS01780 (EA743_001780) pilW 360779..361780 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  EA743_RS01785 (EA743_001785) pilX 361777..362595 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EA743_RS01790 (EA743_001790) pilY1 362607..366461 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  EA743_RS01795 (EA743_001795) pilY2 366474..366956 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  EA743_RS01800 (EA743_001800) pilE 366953..367378 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=358132 EA743_RS01785 WP_000149374.1 361777..362595(+) (pilX) [Acinetobacter baumannii strain TG31986]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=358132 EA743_RS01785 WP_000149374.1 361777..362595(+) (pilX) [Acinetobacter baumannii strain TG31986]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment