Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAXH7_RS08370 Genome accession   NC_017191
Coordinates   1704452..1704883 (-) Length   143 a.a.
NCBI ID   WP_013352323.1    Uniprot ID   A0A9P1JH41
Organism   Bacillus amyloliquefaciens XH7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699452..1709883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAXH7_RS08360 (BAXH7_01758) hexA 1700952..1703537 (-) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene
  BAXH7_RS08365 (BAXH7_01759) cotE 1703653..1704198 (-) 546 WP_013352324.1 outer spore coat protein CotE -
  BAXH7_RS08370 (BAXH7_01760) ymcA 1704452..1704883 (-) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAXH7_RS08375 (BAXH7_01761) miaB 1704886..1706415 (-) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAXH7_RS08380 (BAXH7_01762) - 1706558..1707733 (-) 1176 WP_014470387.1 glycine C-acetyltransferase -
  BAXH7_RS08385 (BAXH7_01763) tdh 1707749..1708795 (-) 1047 WP_014470388.1 L-threonine 3-dehydrogenase -
  BAXH7_RS08390 (BAXH7_01764) spoVS 1709052..1709312 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16128.29 Da        Isoelectric Point: 5.0213

>NTDB_id=35812 BAXH7_RS08370 WP_013352323.1 1704452..1704883(-) (ymcA) [Bacillus amyloliquefaciens XH7]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEAIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=35812 BAXH7_RS08370 WP_013352323.1 1704452..1704883(-) (ymcA) [Bacillus amyloliquefaciens XH7]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGCGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
CACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923

Multiple sequence alignment