Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GR342_RS05970 Genome accession   NZ_CP047216
Coordinates   1168253..1168747 (+) Length   164 a.a.
NCBI ID   WP_052786192.1    Uniprot ID   -
Organism   Campylobacter coli strain SH89     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163253..1173747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS05955 (GR342_05895) - 1164631..1165812 (-) 1182 WP_002786473.1 metal-dependent hydrolase -
  GR342_RS05960 (GR342_05900) - 1165821..1166720 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GR342_RS05965 (GR342_05905) gatB 1166720..1168138 (-) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GR342_RS05970 (GR342_05910) luxS 1168253..1168747 (+) 495 WP_052786192.1 S-ribosylhomocysteine lyase Regulator
  GR342_RS05975 (GR342_05915) - 1169063..1170055 (+) 993 WP_072215660.1 isopenicillin N synthase family oxygenase -
  GR342_RS05980 (GR342_05920) - 1170069..1170839 (+) 771 WP_072215661.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  GR342_RS05985 (GR342_05925) metE 1170862..1173126 (+) 2265 WP_072215662.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18329.21 Da        Isoelectric Point: 5.0135

>NTDB_id=358118 GR342_RS05970 WP_052786192.1 1168253..1168747(+) (luxS) [Campylobacter coli strain SH89]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGIPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=358118 GR342_RS05970 WP_052786192.1 1168253..1168747(+) (luxS) [Campylobacter coli strain SH89]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCATACCTGATGAAAAAAGTGTGGCCAAGGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCGTAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707