Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GR342_RS05360 Genome accession   NZ_CP047216
Coordinates   1048538..1049086 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain SH89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1043538..1054086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS05330 (GR342_05275) rseP 1043653..1044756 (+) 1104 WP_250405731.1 RIP metalloprotease RseP -
  GR342_RS05335 (GR342_05280) - 1044753..1045609 (+) 857 Protein_1026 VirK family antimicrobial peptide resistance protein -
  GR342_RS05340 (GR342_05285) - 1045602..1046603 (-) 1002 WP_002780256.1 TIM barrel protein -
  GR342_RS05345 (GR342_05290) - 1046603..1047873 (-) 1271 Protein_1028 MFS transporter -
  GR342_RS05355 (GR342_05295) rpsF 1048152..1048529 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  GR342_RS05360 (GR342_05300) ssb 1048538..1049086 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  GR342_RS05365 (GR342_05305) rpsR 1049097..1049357 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  GR342_RS05370 (GR342_05310) lon 1049413..1051788 (-) 2376 WP_002783351.1 endopeptidase La -
  GR342_RS05375 (GR342_05315) bamD 1051804..1052451 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  GR342_RS05380 (GR342_05320) fliW 1052615..1053004 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  GR342_RS05385 (GR342_05325) proC 1053004..1053741 (+) 738 WP_002834520.1 pyrroline-5-carboxylate reductase Machinery gene
  GR342_RS05390 (GR342_05330) ctsT 1053738..1054043 (+) 306 WP_002777852.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=358111 GR342_RS05360 WP_002777084.1 1048538..1049086(+) (ssb) [Campylobacter coli strain SH89]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=358111 GR342_RS05360 WP_002777084.1 1048538..1049086(+) (ssb) [Campylobacter coli strain SH89]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379