Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E7Z57_RS04790 Genome accession   NZ_CP039339
Coordinates   951656..953026 (+) Length   456 a.a.
NCBI ID   WP_064049870.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946656..958026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS04770 (E7Z57_04770) rimI 946908..947441 (+) 534 WP_064049866.1 ribosomal protein S18-alanine N-acetyltransferase -
  E7Z57_RS04775 (E7Z57_04775) - 947512..948381 (+) 870 WP_138928610.1 uracil-DNA glycosylase -
  E7Z57_RS04780 (E7Z57_04780) lplT 948502..949818 (-) 1317 WP_064049868.1 lysophospholipid transporter LplT -
  E7Z57_RS04785 (E7Z57_04785) alr 950449..951576 (+) 1128 WP_064049869.1 alanine racemase -
  E7Z57_RS04790 (E7Z57_04790) radA 951656..953026 (+) 1371 WP_064049870.1 DNA repair protein RadA Machinery gene
  E7Z57_RS04795 (E7Z57_04795) - 953120..953599 (+) 480 WP_011001322.1 disulfide bond formation protein B -
  E7Z57_RS04800 (E7Z57_04800) - 953659..954120 (+) 462 WP_231105072.1 DUF523 domain-containing protein -
  E7Z57_RS04805 (E7Z57_04805) - 954103..955209 (-) 1107 WP_064049871.1 CaiB/BaiF CoA transferase family protein -
  E7Z57_RS04810 (E7Z57_04810) - 955241..957181 (-) 1941 WP_138928611.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48401.87 Da        Isoelectric Point: 7.6668

>NTDB_id=358105 E7Z57_RS04790 WP_064049870.1 951656..953026(+) (radA) [Ralstonia pseudosolanacearum strain UW386]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVETVAQPASGAGARFQSLAASAMVRKLADIDAVDVPRFSSGIDEFDR
VLGGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAASRRVLYVSGEESGAQIALRARRLGVESPNLALLAEIQLERIQATI
EAEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQPIDGLQVIAVERIEQAIDRVRGLEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=358105 E7Z57_RS04790 WP_064049870.1 951656..953026(+) (radA) [Ralstonia pseudosolanacearum strain UW386]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAGTGCGGTGGTACGTCGCCGAAATGGGCGGGGCAGTGTCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAACCGTGGCGCAGCCGGCGTCCGGCGCCGGCGCGCGCTTCCAGTCGCTGGCGGCGA
GCGCCATGGTGCGCAAGCTGGCGGACATCGACGCGGTGGACGTGCCGCGCTTCTCCAGCGGCATTGACGAATTCGACCGC
GTGCTGGGTGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCT
GCAGGCGCTGTCCAACCTGGCGGCCAGCCGGCGCGTGCTGTACGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGC
GGGCGCGGCGCCTGGGCGTCGAAAGCCCGAACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGCGCATCCAGGCCACCATC
GAGGCGGAGAAGCCCGAGGTGGTCGTCATCGATTCGATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCGCTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGATACGGTGCTGTATTTCGAGGGCGAC
ACGCATTCGGCCTACCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGCCATGAC
TGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATGCGGCGGGCGTGCCGAACCCG
CGGCGGCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCCTG
CTTCGACCAGGATGTGTTCCTCAATGCCGTGGGCGGGGTCAAGATTACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGG
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTCTTCGGCGAGATCGGGCTGGCCGGCGAGATC
CGTCCGACGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTTTCGATTGCCGTGATCCCCAAGTCGAA
CGCGCCCAAGCAGCCGATCGACGGCCTGCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCGATCGACCGGGTGCGCGGGC
TGGAAGCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-219)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.489
  radA Streptococcus pneumoniae Rx1

46.93

100

0.469
  radA Streptococcus pneumoniae D39

46.93

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.469
  radA Streptococcus pneumoniae R6

46.93

100

0.469
  radA Streptococcus mitis SK321

47.124

99.123

0.467
  radA Streptococcus mitis NCTC 12261

46.903

99.123

0.465

Multiple sequence alignment