Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GR342_RS03230 Genome accession   NZ_CP047216
Coordinates   634239..634619 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain SH89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 629239..639619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS03210 (GR342_03185) - 629369..631303 (-) 1935 WP_072228370.1 ribonuclease R family protein -
  GR342_RS03215 (GR342_03190) ilvC 631426..632448 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR342_RS03220 (GR342_03195) - 632451..633482 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  GR342_RS03225 (GR342_03200) dprA 633472..634242 (+) 771 WP_250414716.1 DNA-processing protein DprA Machinery gene
  GR342_RS03230 (GR342_03205) dprB 634239..634619 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  GR342_RS03235 (GR342_03210) - 634609..635484 (+) 876 WP_002781660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR342_RS03240 (GR342_03215) msrA 635707..636207 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR342_RS03245 (GR342_03220) ppa 636255..636773 (-) 519 WP_002776378.1 inorganic diphosphatase -
  GR342_RS03250 (GR342_03225) - 636783..637358 (-) 576 WP_002781658.1 adenylate kinase -
  GR342_RS03255 (GR342_03230) aspS 637355..639106 (-) 1752 WP_072222169.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=358104 GR342_RS03230 WP_002776373.1 634239..634619(+) (dprB) [Campylobacter coli strain SH89]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=358104 GR342_RS03230 WP_002776373.1 634239..634619(+) (dprB) [Campylobacter coli strain SH89]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421