Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GR341_RS08505 Genome accession   NZ_CP047214
Coordinates   1644472..1645977 (-) Length   501 a.a.
NCBI ID   WP_139847364.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1639472..1650977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS08475 (GR341_08505) - 1639715..1640455 (-) 741 WP_002778542.1 TerC family protein -
  GR341_RS08480 (GR341_08510) - 1640596..1641312 (+) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  GR341_RS08485 (GR341_08515) - 1641478..1641714 (+) 237 WP_002778540.1 hypothetical protein -
  GR341_RS08490 (GR341_08520) purN 1641852..1642427 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  GR341_RS08495 (GR341_08525) - 1642418..1643788 (-) 1371 WP_131235573.1 NAD(P)H-hydrate dehydratase -
  GR341_RS08500 (GR341_08530) - 1643772..1644470 (-) 699 WP_002778537.1 NYN domain-containing protein -
  GR341_RS08505 (GR341_08535) comM 1644472..1645977 (-) 1506 WP_139847364.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GR341_RS08510 (GR341_08540) def 1645974..1646501 (-) 528 WP_002778535.1 peptide deformylase -
  GR341_RS08515 (GR341_08545) clpP 1646529..1647113 (-) 585 WP_002783575.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GR341_RS08520 (GR341_08550) tig 1647113..1648438 (-) 1326 WP_002785451.1 trigger factor -
  GR341_RS08525 (GR341_08555) folE 1648559..1649131 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  GR341_RS08530 (GR341_08560) fliI 1649131..1650516 (+) 1386 WP_002778528.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56607.65 Da        Isoelectric Point: 8.8829

>NTDB_id=358090 GR341_RS08505 WP_139847364.1 1644472..1645977(-) (comM) [Campylobacter coli strain QL_1_15]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKNCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=358090 GR341_RS08505 WP_139847364.1 1644472..1645977(-) (comM) [Campylobacter coli strain QL_1_15]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAAATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.092

99.601

0.459