Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   GR341_RS07735 Genome accession   NZ_CP047214
Coordinates   1496190..1496777 (-) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491190..1501777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS07715 (GR341_07730) - 1491945..1492709 (+) 765 WP_002781156.1 TIGR02757 family protein -
  GR341_RS07720 (GR341_07735) - 1492712..1493476 (+) 765 WP_002781157.1 TSUP family transporter -
  GR341_RS07725 (GR341_07740) ctsF 1493473..1494648 (-) 1176 WP_002842963.1 type II secretion system F family protein Machinery gene
  GR341_RS07730 (GR341_07745) ctsE 1494635..1496197 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR341_RS07735 (GR341_07750) ctsX 1496190..1496777 (-) 588 WP_002810825.1 CDC27 family protein Machinery gene
  GR341_RS07740 (GR341_07755) ctsP 1496774..1497370 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR341_RS07745 (GR341_07760) ctsD 1497363..1498781 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR341_RS07750 (GR341_07765) ctsR 1498759..1499070 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=358086 GR341_RS07735 WP_002810825.1 1496190..1496777(-) (ctsX) [Campylobacter coli strain QL_1_15]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=358086 GR341_RS07735 WP_002810825.1 1496190..1496777(-) (ctsX) [Campylobacter coli strain QL_1_15]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCTAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436