Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GR341_RS06365 Genome accession   NZ_CP047214
Coordinates   1222227..1223093 (-) Length   288 a.a.
NCBI ID   WP_131235448.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1217227..1228093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS06340 (GR341_06345) radA/sms 1217705..1219045 (-) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  GR341_RS06345 (GR341_06350) - 1219181..1220032 (+) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  GR341_RS06350 (GR341_06355) - 1220035..1220916 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  GR341_RS06355 (GR341_06360) - 1220958..1221293 (+) 336 WP_002777373.1 hypothetical protein -
  GR341_RS06360 (GR341_06365) - 1221286..1222230 (+) 945 WP_002777375.1 GTP-binding protein -
  GR341_RS06365 (GR341_06370) pilA 1222227..1223093 (-) 867 WP_131235448.1 signal recognition particle-docking protein FtsY Machinery gene
  GR341_RS06370 (GR341_06375) - 1223093..1223650 (-) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  GR341_RS06375 (GR341_06380) - 1223731..1224357 (+) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  GR341_RS06380 (GR341_06385) rny 1224278..1225831 (+) 1554 WP_002784377.1 ribonuclease Y -
  GR341_RS06385 (GR341_06390) - 1225842..1226399 (+) 558 WP_002788123.1 DedA family protein -
  GR341_RS06390 (GR341_06395) - 1226399..1227658 (+) 1260 WP_002777385.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31846.88 Da        Isoelectric Point: 5.1228

>NTDB_id=358073 GR341_RS06365 WP_131235448.1 1222227..1223093(-) (pilA) [Campylobacter coli strain QL_1_15]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNTGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=358073 GR341_RS06365 WP_131235448.1 1222227..1223093(-) (pilA) [Campylobacter coli strain QL_1_15]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGCACTCAAG
GCAATACCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444