Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GR341_RS05680 Genome accession   NZ_CP047214
Coordinates   1084407..1084955 (+) Length   182 a.a.
NCBI ID   WP_052780253.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1079407..1089955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS05655 (GR341_05660) rseP 1079521..1080624 (+) 1104 WP_060794051.1 RIP metalloprotease RseP -
  GR341_RS05660 (GR341_05665) - 1080621..1081477 (+) 857 Protein_1087 VirK family antimicrobial peptide resistance protein -
  GR341_RS05665 (GR341_05670) - 1081470..1082471 (-) 1002 WP_057030590.1 TIM barrel protein -
  GR341_RS05670 (GR341_05675) - 1082471..1083742 (-) 1272 WP_057030591.1 MFS transporter -
  GR341_RS05675 (GR341_05680) rpsF 1084021..1084398 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  GR341_RS05680 (GR341_05685) ssb 1084407..1084955 (+) 549 WP_052780253.1 single-stranded DNA-binding protein Machinery gene
  GR341_RS05685 (GR341_05690) rpsR 1084966..1085226 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  GR341_RS05690 (GR341_05695) lon 1085282..1087657 (-) 2376 WP_170876373.1 endopeptidase La -
  GR341_RS05695 (GR341_05700) bamD 1087673..1088320 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  GR341_RS05700 (GR341_05705) fliW 1088485..1088874 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  GR341_RS05705 (GR341_05710) proC 1088874..1089611 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  GR341_RS05710 (GR341_05715) ctsT 1089608..1089913 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20747.64 Da        Isoelectric Point: 4.8501

>NTDB_id=358064 GR341_RS05680 WP_052780253.1 1084407..1084955(+) (ssb) [Campylobacter coli strain QL_1_15]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQTYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=358064 GR341_RS05680 WP_052780253.1 1084407..1084955(+) (ssb) [Campylobacter coli strain QL_1_15]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
CTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379