Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR339_RS05990 Genome accession   NZ_CP047212
Coordinates   1183140..1183715 (+) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain JZ_1_79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178140..1188715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS05970 (GR339_05920) - 1178571..1179821 (+) 1251 WP_233907874.1 major outer membrane protein -
  GR339_RS05975 (GR339_05925) dnaJ 1179961..1181085 (-) 1125 WP_002799559.1 molecular chaperone DnaJ -
  GR339_RS05980 (GR339_05930) - 1181232..1181903 (+) 672 WP_002776259.1 response regulator transcription factor -
  GR339_RS05985 (GR339_05935) - 1181900..1183150 (+) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  GR339_RS05990 (GR339_05940) recR 1183140..1183715 (+) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  GR339_RS05995 (GR339_05945) - 1183717..1184250 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  GR339_RS06000 (GR339_05950) cybH 1184247..1184939 (-) 693 WP_052779055.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  GR339_RS06005 (GR339_05955) - 1184951..1186666 (-) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  GR339_RS06010 (GR339_05960) - 1186672..1187811 (-) 1140 WP_002776249.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=358038 GR339_RS05990 WP_002776257.1 1183140..1183715(+) (recR) [Campylobacter coli strain JZ_1_79]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=358038 GR339_RS05990 WP_002776257.1 1183140..1183715(+) (recR) [Campylobacter coli strain JZ_1_79]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment