Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GR339_RS05810 Genome accession   NZ_CP047212
Coordinates   1142734..1143114 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain JZ_1_79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137734..1148114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS05785 (GR339_05735) aspS 1138247..1139998 (+) 1752 WP_002812716.1 aspartate--tRNA ligase -
  GR339_RS05790 (GR339_05740) - 1139995..1140570 (+) 576 WP_002781658.1 adenylate kinase -
  GR339_RS05795 (GR339_05745) ppa 1140580..1141098 (+) 519 WP_002776378.1 inorganic diphosphatase -
  GR339_RS05800 (GR339_05750) msrA 1141146..1141646 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR339_RS05805 (GR339_05755) - 1141869..1142744 (-) 876 WP_002810977.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR339_RS05810 (GR339_05760) dprB 1142734..1143114 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  GR339_RS05815 (GR339_05765) dprA 1143111..1143881 (-) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  GR339_RS05820 (GR339_05770) - 1143871..1144923 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  GR339_RS05825 (GR339_05775) ilvC 1144926..1145948 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR339_RS05830 (GR339_05780) - 1146071..1148005 (+) 1935 WP_233915242.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=358035 GR339_RS05810 WP_002776373.1 1142734..1143114(-) (dprB) [Campylobacter coli strain JZ_1_79]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=358035 GR339_RS05810 WP_002776373.1 1142734..1143114(-) (dprB) [Campylobacter coli strain JZ_1_79]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421