Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   GR340_RS08140 Genome accession   NZ_CP047197
Coordinates   1556040..1556636 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain JZ_1_95     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551040..1561636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS08120 (GR340_08000) - 1551795..1552559 (+) 765 WP_002781156.1 TIGR02757 family protein -
  GR340_RS08125 (GR340_08005) - 1552562..1553326 (+) 765 WP_277737385.1 TSUP family transporter -
  GR340_RS08130 (GR340_08010) ctsF 1553323..1554498 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  GR340_RS08135 (GR340_08015) ctsE 1554485..1556047 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR340_RS08140 (GR340_08020) ctsX 1556040..1556636 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  GR340_RS08145 (GR340_08025) ctsP 1556633..1557229 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR340_RS08150 (GR340_08030) ctsD 1557222..1558640 (-) 1419 WP_277737386.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR340_RS08155 (GR340_08035) ctsR 1558618..1558929 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=357994 GR340_RS08140 WP_002779313.1 1556040..1556636(-) (ctsX) [Campylobacter coli strain JZ_1_95]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=357994 GR340_RS08140 WP_002779313.1 1556040..1556636(-) (ctsX) [Campylobacter coli strain JZ_1_95]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCTATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434