Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   E4T61_RS01800 Genome accession   NZ_CP039297
Coordinates   340958..341395 (-) Length   145 a.a.
NCBI ID   WP_136396088.1    Uniprot ID   -
Organism   Bacillus velezensis isolate UFLA258     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 335958..346395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS01775 (E4T61_01775) - 336977..338113 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  E4T61_RS01780 (E4T61_01780) - 338128..338562 (+) 435 WP_007409358.1 RDD family protein -
  E4T61_RS01785 (E4T61_01785) - 338635..338958 (+) 324 WP_136396087.1 YckD family protein -
  E4T61_RS01790 (E4T61_01790) - 339062..340498 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  E4T61_RS01795 (E4T61_01795) nin/comJ 340539..340937 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  E4T61_RS01800 (E4T61_01800) nucA/comI 340958..341395 (-) 438 WP_136396088.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  E4T61_RS01805 (E4T61_01805) hxlB 341753..342310 (-) 558 WP_136396089.1 6-phospho-3-hexuloisomerase -
  E4T61_RS01810 (E4T61_01810) hxlA 342307..342942 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  E4T61_RS01815 (E4T61_01815) - 343174..343536 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.31 Da        Isoelectric Point: 7.9204

>NTDB_id=357985 E4T61_RS01800 WP_136396088.1 340958..341395(-) (nucA/comI) [Bacillus velezensis isolate UFLA258]
MKTLKALLLVLIIIAGAVAALIKGELFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHNRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=357985 E4T61_RS01800 WP_136396088.1 340958..341395(-) (nucA/comI) [Bacillus velezensis isolate UFLA258]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGAGCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAATCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634

Multiple sequence alignment